Table 5.
VapC of L. biflexa serovar Patoc strain Patoc 1 (Ames)—Conservation value (C-value) | |||||||||
---|---|---|---|---|---|---|---|---|---|
Leptospira spp. | LBF_0418 VapC-1 | LBF_2142 VapC-2 | LBF_ 2175 VapC-3 | LBF_2183 VapC-4 | LBF_2185 VapC-5 | LBF_2276 VapC-6 | LBF_2813 VapC-7 | LBF_3285 VapC-8 | |
Pathogenic |
L. interrogans
L. interrogans |
0.40 | 0.60 | - | 0.78 | 0.72 | 0.83 | 0.83 | 0.59 |
L. kirschneri | 0.40 | - | - | 0.78 | 0.55 | - | 0.83 | 0.73 | |
L. noguchii | - | 0.61 | - | 0.77 | 0.48 | 0.47 | 0.54 | 0.52 | |
L. borgpetersenii | 0.35 | - | 0.27 | 0.78 | 0.55 | 0.89 | - | 0.73 | |
L. weilii | 0.42 | 0.59 | 0.60 | 0.78 | 0.83 | 0.89 | 0.83 | 0.73 | |
L. santarosai | 0.41 | 0.62 | - | 0.78 | 0.78 | 0.55 | 0.53 | 0.75 | |
L. alexanderi | 0.35 | 0.59 | 0.60 | 0.77 | 0.72 | 0.88 | 0.84 | 0.72 | |
L. alstoni | - | - | 0.59 | 0.79 | 0.72 | 0.85 | 0.83 | 0.73 | |
L. kmetyi | - | - | - | - | - | - | - | - | |
Intermediary | L. wolffii | - | - | - | - | 0.52 | 0.44 | 0.80 | 0.75 |
L. licerasiae | 0.44 | - | - | 0.56 | 0.80 | 0.79 | 0.82 | 0.55 | |
L. inadai | 0.41 | - | - | 0.63 | 0.79 | 0.33 | 0.80 | 0.50 | |
L. fainei | - | - | - | - | - | - | 0.79 | - | |
L. broomii | 0.42 | - | - | - | - | - | - | - | |
Saprophytic | L. wolbachii | 0.40 | 0.94 | 0.99 | 0.88 | 0.92 | 0.45 | 0.87 | 0.92 |
L. meyeri | 0.43 | 0.95 | 0.96 | 0.96 | 0.84 | 0.97 | 0.52 | 0.91 | |
L. biflexa | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | |
L. vanthielii | 0.43 | 0.95 | - | 0.91 | 0.56 | 0.97 | 0.53 | 0.93 | |
L. terpstrae | - | - | - | 0.91 | - | - | - | - | |
L. yanagawae | - | 0.95 | 0.97 | - | 0.57 | 0.44 | 0.53 | 0.95 |
Conservation values (C-values) were expressed as a frequency between 0 and 1. The colors indicate: very highly conserved (0.85 ≤ C-value ≤ 1.0); highly conserved (0.7 ≤ C-value ≤ 0.84); moderately conserved (0.4 ≤ C-value ≤ 0.69); poorly conserved (C-value ≤ 0.39); no hits. Positive and cover values below 50% were not included.