Antibodies |
Bacterial and Virus Strains |
Biological Samples |
|
|
Chemicals, Peptides, and
Recombinant Proteins |
Critical Commercial Assays |
Deposited Data |
HFF-hTERT dilution Hi-C |
This paper |
4DN: 4DNES9L4AK6Q |
HFF-hTERT clone 6 in-situ
Hi-C |
4D Nucleome |
4DN: 4DNES2R6PUEK |
Rao et al in-situ Hi-C |
Rao et al., 2013 |
GSE74072 |
Jin et al dilution Hi-C |
Jin et al.,
2013 |
GSE85977 |
FISH spot positions and distances |
This paper |
4DN: https://data.4dnucleome.org/publications/80007b23-7748-4492-9e49-c38400acbe60/
|
Experimental Models: Cell
Lines |
HFF-hTERT cells |
4D Nucleome |
RRID: CVCL_VC40 |
Experimental Models:
Organisms/Strains |
Oligonucleotides |
Recombinant DNA |
BAC clones (See Table S1) |
CHORI |
See Table S1
|
Software and Algorithms |
Bowtie2.2.8 |
Langmead and
Salzberg, 2012 |
http://bowtie-bio.sourceforge.net/bowtie2/index.shtml |
Hiclib |
Imakaev et al., 2012 |
https://bitbucket.org/mirnylab/hiclib |
Cooler |
Abdennur et al, 2017 |
http://doi.org/10.5281/zenodo.1039971 |
Lavaburst (domain
calling algorithms) |
Schwarzer et al, 2017 |
https://github.com/nvictus/lavaburst |
cWorld |
Lajoie et al.,
2015 |
https://github.com/dekkerlab/cworld-dekker |
Other |