Antibodies |
|
GDF15 (G-5) |
Santa Cruz |
Cat# sc-377195 |
GADD 153 (B-3) |
Santa Cruz |
Cat# sc-7351; RRID: AB_627411
|
Phospho S51 EIF2a |
Epitomics/Abcam |
Cat# ab32157; RRID: AB_732117
|
ATF4 |
Dr David Ron (CIMR) |
(Harding et al., 2000a) |
Calnexin |
Abcam |
Cat# ab75801; RRID: AB_1310022
|
Anti-rabbit IgG, HRP-linked Antibody |
Cell Signaling Technologies |
Cat# 7074; RRID: AB_2099233
|
Anti-mouse IgG, HRP-linked Antibody |
Cell Signaling Technologies |
Cat# 7076; RRID: AB_330924
|
|
Biological Samples |
|
C57BL/6J mice tissues |
Charles River |
JAX C57BL/6J; RRID: IMSR_JAX:000664 |
C57BL/6J mice tissues |
In house (University of Cambridge) |
N/A; RRID: IMSR_JAX:000664 |
Human samples (Blood) |
Various |
See Method Details for details |
|
Chemicals, Peptides, and Recombinant Proteins |
|
Recombinant Human GDF15 |
Peprotech |
Cat# 120-28 |
Lithium Chloride |
Sigma |
Cat# LX0331 |
Tunicamycin |
Sigma |
Cat# T7765 |
Thapsigargin |
Sigma |
Cat# T9033 |
Cobalt(II) chloride hexahydrate |
Sigma |
Cat# C8661 |
L-Histidinol dihydrochloride |
Sigma |
Cat# H6647 |
ISRIB |
Sigma |
Cat# SML0843 |
PERKi - GSK2606414 |
Calbiochem |
Cat# 516535 |
TRI Reagent (Triazol) |
Sigma |
Cat# T9424 |
Chloroform |
Honeywell |
Cat# C2432 |
Ethanol, puriss. p.a., absolute, ≥ 99.8% (GC) |
Sigma |
Cat# 32221-M |
DMEM |
Sigma |
Cat# D6546 |
D-PBS |
Sigma |
Cat# D8537 |
Hanks’ Balanced Salt Solution |
Sigma |
Cat# H9269 |
L-Glutamine |
Sigma |
Cat# G7513 |
Penicillin-Streptomycin |
Sigma |
Cat# P0781 |
MEM Non-essential Amino Acid |
Sigma |
Cat# M7145 |
Sodium pyruvate |
Sigma |
Cat# S8636 |
2-Mercaptoethanol |
GIBCO |
Cat# 31350-010 |
FBS |
GIBCO |
Cat# 10270-106 |
FetalClone II Serum |
Hyclone |
Cat# SH30066.03 |
Sybr Green MasterMix |
Applied Biosystems |
Cat# 4309155 |
Taqman MasterMix |
Applied Biosystems |
Cat# 4304437 |
cOmplete, Mini Protease Inhibitor Cocktail |
Sigma |
Cat# 11836153001 |
PhosSTOP |
Sigma |
Cat# 4906845001 |
Random primers |
Promega |
Cat# C1181 |
RNasin Plus Ribonuclease inhibitor |
Promega |
Cat# N2611 |
MMLV Reverse Transcriptase |
Promega |
Cat# M1701 |
DNase1 |
QIAGEN |
Cat# 79254 |
DNase1 |
Thermofisher Scientific |
Cat# 18068015 |
Lipofectamine RNAiMAX |
Invitrogen |
Cat# 13778-150 |
Collagenase Type II from Clostridium histolyticum |
Sigma |
Cat# C6885 |
NuPAGE 4-12% Bis-Tris Protein Gels, 1.5 mm, 10-well |
Novex |
Cat# NP0335BOX |
NuPAGE MOPS SDS Running Buffer (20X) |
Novex |
Cat# NP0001 |
NuPAGE LDS Sample Buffer (4X) |
Novex |
Cat# NP0007 |
iBlot Transfer Stack, nitrocellulose, regular size |
Invitrogen |
Cat# IB301001 |
Dual Color Standards |
BIO-RAD |
Cat# 1610374 |
Bovine Serum Albumin |
Sigma |
Cat# A7906 |
Immobilon Western (Chemiluminescent HRP Substrate) |
Millipore |
Cat# WBKLS0500 |
ECL Western Blotting Detection Reagents |
GE Healthcare |
Cat# RPN2106 |
Dolethal 200mg/mL Solution for injection |
Vetoquinol UK Ltd |
N/A |
|
Critical Commercial Assays |
|
RNAeasy Mini Kit |
QIAGEN |
Cat# 74106 |
Qiashredder |
QIAGEN |
Cat# 79656 |
Human total GLP-1 |
Meso Scale Discovery |
Cat# K150JVC-1 |
Human Active GLP-1 |
R&D Systems |
Cat# DY957 |
Human Insulin |
Diasorin |
Cat# 310360 |
Human GDF15 Elisa |
R&D Systems |
Cat# DY957 |
Human FGF21 Elisa |
R&D Systems |
Cat# DF2100 |
Human Leptin Elisa |
In-house platform system using R&D Leptin: Cat # MAB398, BAM398 and 398-LP |
https://www.cuh.nhs.uk/core-biochemical-assay-laboratory |
Mouse GDF15 Elisa |
R&D Systems |
Cat# DY6385 |
Mouse FGF21 Elisa |
R&D Systems |
Cat# MF2100 |
Mouse Leptin/insulin 2-Plex |
Meso Scale Discovery |
Cat# K15124C |
|
Experimental Models: Cell Lines |
|
Mouse Embryonic Fibroblasts (MEFs) |
Dr David Ron (CIMR) |
(Scheuner et al., 2001, Harding et al., 2003) |
HeLa |
ATCC |
Cat# CCL-2; RRID: CVCL_0030 |
HuH7 |
Dr Albert Pol, IDIBAPS, Barcelona |
Cat# JCRB0403; RRID: CVCL_0336 |
A549 |
ATCC |
Cat# CCL-185; RRID: CVCL_0023 |
3T3-L1 |
Zenbio |
Cat# SP-L1-F |
|
Experimental Models: Organisms/Strains |
|
M. musculus: C57BL/6J mice strain |
Charles River |
JAX C57BL/6J; RRID: IMSR_JAX:000664 |
M. musculus: C57BL/6J mice strain |
In House (University of Cambridge) |
N/A; RRID: IMSR_JAX:000664 |
M. musculus: C57BL/6N mice strain |
Taconic |
C57BL/6NTac; RRID: MGI:5658006 |
|
Oligonucleotides |
|
Control siRNA |
Dharmacon |
Cat# D-001810-10-20 |
DDIT3 siRNA smartpool On-target Plus |
Dharmacon |
Cat# L-062068-00-0005 |
Human GDF15 Taqman assay |
Thermo Fisher Scientific |
Cat# Hs00171132_m1 |
Human FGF21 Taqman assay |
Thermo Fisher Scientific |
Cat# Hs00173927_m1 |
Mouse GDF15 Taqman assay |
Thermo Fisher Scientific |
Cat# Mm00442228_m1 |
Mouse FGF21 Taqman assay |
Thermo Fisher Scientific |
Cat# Mm00840165_g1 |
Human GAPDH Taqman assay |
Thermo Fisher Scientific |
Cat# Hs02758991_g1 |
Human HPRT Taqman assay |
Thermo Fisher Scientific |
Cat# Hs02800695_m1 |
Mouse HPRT Forward (AGCCTAAGATGAGCGCAAGT); Mouse HPRT Reverse (GGCCACAGGACTAGAACACC) |
This paper |
N/A |
Mouse B2M Forward (ACTGATACATACGCCTGCAGAGTT); Mouse B2M Reverse (TCACATGTCTCGATCCCAGTAGA) |
This paper |
N/A |
Mouse 36b4 Forward (AGATGCAGCAGATCCGCAT); Mouse 36b4 Reverse (GTTCTTGCCCATCAGCACC) |
This paper |
N/A |
Mouse F4/80 Forward CAGATACAGCAATGCCAAGCA; Mouse F4/80 Reverse GATTGTGAAGGTAGCATTCACAAGTG; Mouse F4/80 Probe FAM- GCAGGGCAGGGATCTTGGTTATGC-TAMRA |
This paper |
N/A |
Mouse CHOP Forward (CCACCACACCTGAAAGCAGAA); Mouse CHOP Reverse (AGGTGAAAGGCAGGGACTCA) |
This paper |
(Oslowski and Urano, 2011) |
Mouse ATF4 Forward (GGGTTCTGTCTTCCACTCCA); Mouse ATF4 Reverse (AAGCAGCAGAGTCAGGCTTTC) |
This paper |
(Oslowski and Urano, 2011) |
|
Software and Algorithms |
|
GraphPad PRISM 7 |
1992-2017 GraphPad Software |
RRID: SCR_000306 |
Illustrator (CS6) |
Adobe |
RRID: SCR_010279 |
Photoshop (CS6) |
Adobe |
RRID: SCR_014199 |
|
Other |
|
Chow diet (mouse studies) |
Safe Diets |
Cat# R105-25 |
Chow diet (mouse studies) |
Purina (Lab Diet) |
Cat# 5053 |
45% High Fat Diet (mouse studies) |
Research Diets |
Cat# D12451i |
E Ensure Plus |
Abbot Laboratories |
N/A |
ImageQuant LAS 4000 |
GE Healthcare |
Cat# 28955810 |
Nanodrop 2000 |
Thermofisher Scientific |
N/A |
FastPrep-24 |
MP Biomedical |
Cat# 116004500 |
AlphaTrack2 Glucometer |
Abbot Laboratories |
Cat# CFMU305-H0201 |
AlphaTrack2 strips |
Zoetis |
Cat# 71681-01 |
Hematocrit tubes Na-Heparinized |
Hawksley |
Cat# 01605-00 |
Microtube 1.1 mL Z Gel |
Sarstedt AG & Co |
Cat# 41.1378.005 |
Microtube 1.1 mL Z Gel |
Sarstedt AG & Co |
Cat# 41.1500.005 |
Lysing Matrix D, 2 mL Tube |
MP Biomedical |
Cat# 116913100 |
Sterile Cell strainer (100 μm nylon mesh) |
Fisherbrand |
22363549 |
Minispec LF series (TD-NMR) |
Bruker |
Cat# LF50 |
Lunar PIXImus Mouse Densitometer |
GE Healthcare Systems |
N/A |
iBlot Dry Blotting System |
Invitrogen |
N/A |
PowerPac Universal Power Supply |
BIO-RAD |
Cat# 1645070 |
XCell SureLock Mini-Cell Electrophoresis System |
Invitrogen |
Cat# EI0001 |
QuantStudio 7 Flex Real-Time PCR System |
ThermoFisher Scientific |
Cat# 4485701 |