Table 3.

The experimentally confirmed lncRNAs in the top 20 potential lncRNAs predicted by PMFILDA in three kinds of case studies.

Diseases	lncRNAs	Evidence (PUBMED)
Breast Cancer	MALAT1	22492512, 22996375, 24499465, 27250026, 27777857, 27191888
Breast Cancer	HOTAIR	24499465, 20930520, 21925379, 20393566, 19182780, 21903344
Breast Cancer	H19	22996375, 21489289, 14729626, 16707459, 21748294, 18794369
Breast Cancer	MEG3	27166155, 14602737, 22393162, 22487937
Breast Cancers	GAS5	27034004, 18836484, 20673990, 22487937, 22664915, 26662314
Breast Cancer	PTPRG-AS1	26409453
Breast Cancer	NEAT1	25417700, 27147820, 21532345, 27556296
Breast Cancer	PVT1	24780616, 17908964, 25122612, 26889781
Breast Cancer	CDKN2B-AS1	17440112, 20956613, 20453838, 20956613
Breast Cancer	TUG1	27791993
Breast Cancer	XIST	17545591, 27248326, 18006640, 19440381, 24141629, 26637364
Breast Cancer	ZFAS1	21460236
Lung Cancer	H19	27186394, 26729200
Lung Cancer	HOTAIR	27186394, 26729200, 24757675, 23668363, 27270317
Lung Cancer	MALAT1	25217850, 20937273, 20937273, 27777857
Lung Cancer	HOTTIP	27347311, 26265284
Lung Cancer	MEG3	14602737, 26059239
Lung Cancer	CDKN2B-AS1	27307748, 26729200, 26453113, 25964559, 25889788
Lung Cancer	GAS5	27631209, 26634743, 24357161
Lung Cancer	CCAT1	25129441
Lung Cancer	XIST	27501756, 26339353
Lung Cancer	CASC2	26790438
Lung Cancer	PVT1	26908628, 26729200, 25400777
Lung Cancer	ZNRD1-AS1	27166266
Lung Cancer	NEAT1	27351135, 27270317, 25889788
Lung Cancer	TUG1	24853421, 27485439
Colorectal Cancer	H19	8564957, 22427002, 11120891, 26989025, 19926638, 26068968
Colorectal Cancer	HOTTIP	26617875, 26678886, 27546609
Colorectal Cancer	XIST	17143621
Colorectal Cancer	NEAT1	26314847, 26552600
Colorectal Cancer	MEG3	25636452, 26934323
Colorectal Cancer	TUG1	26856330, 27421138
Colorectal Cancer	PVT1	26990997, 24196785
Colorectal Cancer	CCAT1	23416875, 26064266, 26823726, 24594601, 23594791, 26752646