Skip to main content
. 2019 Feb 8;9(2):233. doi: 10.3390/nano9020233

Table 1.

Commonly used fluorogenic RNA complexes and their spectral properties.

Aptamer Fluorophore KD (nM) Ex./Em. (nm) Ɛ (M−1cm−1) a ɸ b Brightness c
Spinach [35] DFHBI 540 469/501 24,300 0.72 100
Spinach2 [31] DFHBI 530 447/501 22,000 0.72 91
Spinach2 [31] DFHBI-1T 560 482/505 31,000 0.94 167
Spinach2 [31] DFHBI-2T 1300 500/523 29,000 0.12 20
Broccoli [79] DFHBI-1T 360 472/507 29,600 0.94 159
Corn [83] DFHO 70 505/545 29,000 0.25 41
Mango [84] TO1-Biotin 3.2 510/535 77,500 0.14 62
Mango [84] TO3-Biotin 5.1 637/658 9300 N/A d N/A
Mango II [85] TO1-Biotin 0.7 510/535 77,000 0.2 88
Mango III [85] TO1-Biotin 5.6 510/535 77,000 0.56 247
Mango IV [85] TO1-Biotin 11.1 510/535 77,000 0.42 185
DNB [87] SR-DN 800 572/591 50,250 0.98 282
SRB-2 [86] SR-DN 1400 579/596 85,200 0.65 317

a Ɛ—Extinction Coefficient. b ɸ—Quantum Yield. c Brightness—Extinction Coefficient × Quantum Yield relative to Spinach-DFHBI. d N/A—Not Available.