Table 1.
The transport inhibitor response 1/auxin signaling f-box protein (TIR1/AFB) family members in Brassica juncea var. tumida.
| Group | Gene Name | Locus | Sequence ID | Exon | Genomics (bp) | CDS (bp) | Protein (aa) | pI | MW (kD) |
|---|---|---|---|---|---|---|---|---|---|
| TIR1 | BjuTIR1A | B06 | BjuB022928 | 3 | 2360 | 1788 | 595 | 6.80 | 66.87 |
| BjuTIR1B | A09 | BjuA036398 | 3 | 2340 | 1785 | 594 | 7.42 | 66.75 | |
| BjuTIR1C | A07 | BjuA026836 | 3 | 2318 | 1785 | 594 | 7.70 | 66.72 | |
| BjuTIR1D | B06 | BjuB006272 | 3 | 2302 | 1785 | 594 | 7.96 | 66.86 | |
| BjuTIR1E | A04 | BjuA014423 | 3 | 2428 | 1776 | 591 | 7.41 | 66.57 | |
| BjuTIR1F | B06 | BjuB022182 | 3 | 2667 | 1566 | 521 | 8.13 | 58.58 | |
| AFB1 | BjuAFB1A | A09 | BjuA031507 | 3 | 2746 | 1755 | 584 | 8.14 | 66.24 |
| BjuAFB1B | A03 | BjuA042044 | 2 | 1873 | 1758 | 585 | 5.22 | 65.24 | |
| BjuAFB1C | A03 | BjuA010943 | 3 | 2540 | 1758 | 585 | 5.49 | 65.52 | |
| BjuAFB1D | B08 | BjuB018573 | 4 | 2489 | 1680 | 559 | 8.19 | 63.57 | |
| AFB2 | BjuAFB2 | B04 | BjuB027337 | 3 | 2230 | 1731 | 576 | 6.30 | 64.74 |
| AFB3 | BjuAFB3A | A08 | BjuA031011 | 3 | 2266 | 1779 | 592 | 5.94 | 66.60 |
| BjuAFB3B | B03 | BjuB033204 | 3 | 1917 | 1773 | 590 | 6.13 | 66.41 | |
| BjuAFB3C | A09 | BjuA036983 | 3 | 2269 | 1734 | 577 | 6.49 | 65.04 | |
| BjuAFB3D | B02 | BjuB048292 | 4 | 2136 | 1659 | 552 | 5.68 | 62.07 | |
| AFB4 | BjuAFB4 | B05 | BjuB014241 | 3 | 1987 | 1830 | 609 | 5.58 | 68.13 |
| AFB5 | BjuAFB5A | Contig | BjuO006283 | 3 | 2017 | 1818 | 605 | 5.52 | 67.81 |
| BjuAFB5B | A03 | BjuA011137 | 3 | 2167 | 1821 | 606 | 5.54 | 67.84 |
pI: Isoelectric point; MW: molecular weight.