Table 1.

Comparison of read assignment between full coverage poly-A RNA-seq, SFL, and 3′DGE.

		Counts (million)				Percent (value/library size)
		Mean (SD)	Median	Minimum	Maximum	Mean (SD)	Median	Minimum	Maximum
		Poly-A RNA-seq (RNA-seq)
Library size (total reads)		13.0 (2.3)	12.6	9.3	17.6
Aligned reads		12.4 (2.2)	12.0	9.0	16.9	95.9 (1.3)	96.0	92.4	97.9
Uniquely aligned reads		10.8 (1.9)	10.3	7.8	14.8	82.9 (1.5)	83.0	79.5	85.3
Counted reads		8.4 (1.5)	8.1	6.4	10.9	65.2 (2.7)	64.6	60.5	70.3
		Sparse full length sequencing (SFL)
Library size (total reads)		3.8 (1.1)	3.5	1.6	6.9
Aligned reads		3.3 (1.0)	3.1	1.4	5.9	88.5 (2.9)	88.8	73.0	92.5
Uniquely aligned reads		1.8 (0.6)	1.8	0.7	3.2	48.5 (8.0)	46.8	27.6	64.8
Counted reads		0.9 (0.3)	0.9	0.3	1.6	24.5 (4.0)	23.8	14.3	31.7
		3′ digital gene expression (3′DGE)
Library size (total reads)		3.7 (0.7)	3.7	1.9	5.6
Aligned reads		3.0 (0.6)	3.0	1.5	4.5	80.6 (1.6)	81.0	73.5	82.2
Uniquely aligned reads
Counted reads		1.2 (0.2)	1.2	0.7	1.8	33.3 (1.4)	33.0	30.5	38.6