Table 1. Strains used in this study.
n/a, Not available.
| Strain | Place of strain isolation | Conclusion of ICT investigation | Patient | Ward | Time from P01D0000 (days) | Genome sequencing | Assembly status | Reference |
|---|---|---|---|---|---|---|---|---|
| P01D0000 | Miyazaki, Japan | Not investigated | P01 | Fa | 0 | This study | Complete | This study |
| P02D0213 | Miyazaki, Japan | Not investigated | P02 | Fa | 213 | This study | Draft | This study |
| P03D0629 | Miyazaki, Japan | Outbreak | P03 | Fa | 629 | This study | Complete | This study |
| P04D0736 | Miyazaki, Japan | Outbreak | P04 | Fa | 736 | This study | Draft | This study |
| P05D0741 | Miyazaki, Japan | Outbreak | P05 | Fa | 741 | This study | Draft | This study |
| P06D0798 | Miyazaki, Japan | Non-outbreak | P06 | Fa | 798 | This study | Complete | This study |
| P07D0876 | Miyazaki, Japan | Outbreak | P07 | Fa | 876 | This study | Draft | This study |
| P08D0905 | Miyazaki, Japan | Outbreak | P08 | Fa | 905 | This study | Draft | This study |
| P09D0927 | Miyazaki, Japan | Outbreak | P09 | Fa | 927 | This study | Draft | This study |
| P10D0937 | Miyazaki, Japan | Outbreak | P10 | Fa | 937 | This study | Draft | This study |
| P11D0946 | Miyazaki, Japan | Outbreak | P11 | Fa | 946 | This study | Draft | This study |
| P11D1015 | Miyazaki, Japan | Outbreak | P11 | Fa | 1015 | This study | Draft | This study |
| P12D0946 | Miyazaki, Japan | Outbreak | P12 | Fb | 946 | This study | Draft | This study |
| P13D0979 | Miyazaki, Japan | Outbreak | P13 | Fa | 979 | This study | Draft | This study |
| P14D1067 | Miyazaki, Japan | Outbreak | P14 | Fa | 1067 | This study | Draft | This study |
| P15D1072 | Miyazaki, Japan | Outbreak | P15 | Fc | 1072 | This study | Draft | This study |
| P16D1106 | Miyazaki, Japan | Outbreak | P16 | Fa | 1106 | This study | Draft | This study |
| P17D1144 | Miyazaki, Japan | Outbreak | P17 | Fa | 1144 | This study | Draft | This study |
| P18D1268 | Miyazaki, Japan | Non-outbreak | P18 | Fa | 1268 | This study | Draft | This study |
| P19D1315 | Miyazaki, Japan | Non-outbreak | P19 | Fa | 1315 | This study | Draft | This study |
| P20D1835 | Miyazaki, Japan | Not investigated | P20 | Fa | 1835 | This study | Draft | This study |
| P21D1863 | Miyazaki, Japan | Not investigated | P21 | Fd | 1863 | This study | Draft | This study |
| ATCC BAA-847T | USA | n/a | n/a | n/a | n/a | AP012492.1 | Complete | [30] |
| CCUG18818T | USA | n/a | n/a | n/a | n/a | This study | Draft | [48] |
| CCUG19503 | Ottawa, Canada | n/a | n/a | n/a | n/a | This study | Draft | [49] |
| CCUG19504 | Ottawa, Canada | n/a | n/a | n/a | n/a | This study | Draft | [49] |
| MRY08-1234 | Hokkaido, Japan | n/a | n/a | n/a | n/a | AP017374.1 | Complete | [31] |
| MRY12-0051 | Hokkaido, Japan | n/a | n/a | n/a | n/a | DRR090193 | Draft | [31] |
| PAGU611 | Kumamoto, Japan | n/a | n/a | n/a | n/a | AP012344.1 | Complete | [29] |
| PAGU617 | Kumamoto, Japan | n/a | n/a | n/a | n/a | This study | Draft | [32] |
| PAGU628 | Tokyo, Japan | n/a | n/a | n/a | n/a | This study | Draft | This study |
| PAGU1382 | Kumamoto, Japan | n/a | n/a | n/a | n/a | This study | Draft | This study |