| Alfy | Autophagy-linked FYVE-domain protein |
| AD | Alzheimer’s disease |
| AMPK | AMP-activated protein kinase |
| ALS | Amyotrophic lateral sclerosis |
| Aβ | β-amyloid |
| CBZ | Carbamazepine |
| PrPC | Cellular prion protein |
| CNS | Central nervous system |
| CMA | Chaperone-mediated autophagy |
| DEPTOR | DEP domain-containing mTOR interacting protein |
| 4E-BP1 | EIF4E-binding protein 1 |
| eIF4E | Eukaryotic translation initiation factor 4E |
| GSK-3β | Glycogen synthase kinase-3 β |
| Hsc70 | Heat shock complex 70 |
| HD | Huntington’s disease |
| IMPase | Inositol monophosphatase |
| IPP | Inositol polyphosphatase-1 |
| IP3 | 1,4,5 inositol triphosphate |
| mLST8 | Mammalian lethal with SEC13 protein 8 |
| mTOR | Mammalian target of rapamycin |
| LC3B | Microtubule-associated protein 1 light chain 3 B |
| MTOC | Microtubule organizing center |
| mTORC1 | MTOR enzymatic complex 1 |
| mTORC2 | MTOR enzymatic complex 2 |
| NBR1 | Neighbor of BRCA1 gene1 |
| PD | Parkinson’s disease |
| PIP2 | Phosphatidylinositol 4′,5′-biphosphate |
| PIP3 | Phosphatidylinositol 3,4,5-triphosphate |
| PI3K | Phosphoinositide 3-kinase |
| PIKKs | PI3K-related kinase |
| PrPSc | Prion protein Scrapie |
| PRAS40 | Proline rich AKT substrate 40-kDa |
| PCDs | Protein conformational disorders |
| PINK1 | PTEN-induced putative protein kinase 1 |
| Rheb | RAS homolog enriched in brain |
| RAPTOR | Regulatory associated protein of mTOR |
| ROS | Reactive oxygen species |
| S6K1 | S6 kinase 1 |
| SQSTM1/p62 | Sequestrosome 1/p62 |
| SMERs | Small-molecule enhancers of rapamycin |
| TSE | Transmissible spongiform encephalopathies |
| TSC | Tuberous sclerosis complex |
| UPS | Ubiquitin-proteasome system |
| Ulk1 | Unc-51-like kinase 1 |
| VPA | Valproic acid |