| CCCPP | Computing Cavities, Channels, Pores and Pockets (software) |
| CV | Critical Value |
| CYP | Cytochrome P450 |
| MCP | Minimal Cost Path |
| MD | Molecular Dynamics |
| PM | Plasma Membrane |
| RAMD | Random Acceleration Molecular Dynamics |
| SMD | Steering Molecular Dynamics |
| SRS | Substrate Recognition Site |
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