| DIA | data-independent acquisition |
| DDA | data-dependent acquisition |
| PAMP | pathogen-associated molecular pattern |
| MAMP | microbial associated molecular pattern |
| DAMP | damaged-associated molecular pattern |
| ETS | effector-triggered susceptibility |
| PTI | PAMP-triggered immunity |
| ETI | effector-triggered immunity |
| HR | hypersensitive response |
| PCD | programmed cell death |
| SA | salicylic acid |
| JA | jasmonic acid |
| ABA | abscisic acid |
| ET | ethylene |
| Pst DC3000 | Pseudomonas syringae pv. tomato DC3000 |
| SAR | systemic acquired resistance |
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