Table 3.
TOP lowest term P value corrected with Bonferroni step-down of RAB7A and ITGB1.
CHIP | GOID | GO Term | Number of Genes | Associated genes (%) | Term P value | Term P value corrected with Bonferroni step-down |
---|---|---|---|---|---|---|
GSE4226 | GO:0044403 | Symbiosis, encompassing mutualism through parasitism | 113 | 10.53122 | 5.98E-33 | 1.23E-30 |
GO:0016032 | Viral process | 109 | 10.62378 | 4.57E-32 | 9.32E-30 | |
GO:0019058 | Viral life cycle | 74 | 15.16394 | 1.85E-31 | 3.76E-29 | |
GO:0009056 | Catabolic process | 146 | 5.968929 | 4.54E-17 | 8.63E-15 | |
GO:0034613 | Cellular protein localization | 121 | 6.547619 | 6.10E-17 | 1.15E-14 | |
| ||||||
GSE18309 | GO:0006955 | Immune response | 314 | 14.47672 | 1.25E-08 | 8.10E-06 |
GO:0040011 | Locomotion | 443 | 24.7072 | 8.99E-11 | 6.07E-08 | |
GO:0032879 | Regulation of localization | 601 | 22.68781 | 8.00E-08 | 5.08E-05 | |
GO:0045321 | Leukocyte activation | 178 | 13.69231 | 3.53E-07 | 2.20E-04 | |
GO:0023052 | Signaling | 1386 | 20.76716 | 4.25E-07 | 2.64E-04 | |
| ||||||
GSE1297 | GO:0044699 | Single-organism process | 248 | 1.814856 | 1.08E-07 | 1.16E-05 |
GO:0044763 | Single-organism cellular process | 213 | 1.933551 | 1.77E-07 | 1.86E-05 | |
GO:0048522 | Positive regulation of cellular process | 117 | 2.322811 | 7.89E-07 | 8.13E-05 | |
GO:0048518 | Positive regulation of biological process | 125 | 2.214349 | 3.47E-06 | 3.51E-04 | |
GO:0007154 | Cell communication | 139 | 2.078039 | 2.60E-05 | 0.002369 | |
| ||||||
GSE5281 | GO:0010604 | Positive regulation of macromolecule metabolic process | 1215 | 39.69291 | 4.13E-28 | 4.28E-25 |
GO:0009893 | Positive regulation of metabolic process | 1299 | 39.23286 | 8.40E-28 | 8.72E-25 | |
GO:0006996 | Organelle organization | 1460 | 38.04065 | 1.36E-24 | 1.40E-21 | |
GO:0048523 | Negative regulation of cellular process | 1681 | 36.92882 | 6.16E-22 | 6.32E-19 | |
GO:0009966 | Regulation of signal transduction | 1131 | 38.67989 | 3.85E-21 | 3.94E-18 |