Table 3.
List of “Thyodictyon syntrophicum” strain Cad16T proteins identified as more abundant in the dark period.
| Accession | Name | COG category | cat score | lfdr |
|---|---|---|---|---|
| AUB80187.1 | Isocitrate dehydrogenase (NADP) | C | 2.94 | 3.81E-03 |
| AUB81294.1 | Oxidoreductase | C | 3.54 | 2.26E-04 |
| AUB82371.1 | Adenylylsulfate reductase alpha subunit | C | 3.03 | 3.81E-03 |
| AUB83156.1 | NADH dehydrogenase NAD(P)H nitroreductase | C | 3.03 | 3.81E-03 |
| AUB84003.1 | Rubrerythrin | C | 2.54 | 4.44E-02 |
| AUB80125.1 | Cell division protein FtsZ | D | 2.67 | 2.93E-02 |
| AUB79575.1 | Extracellular solute-binding protein, family 3 | E | 2.62 | 4.44E-02 |
| AUB81750.1 | Decarboxylase | E | 2.63 | 2.93E-02 |
| AUB83785.1 | 4-hydroxy-tetrahydrodipicolinate synthase | E | 2.94 | 4.18E-03 |
| AUB84954.1 | acetolactate synthase | E | 2.76 | 1.95E-02 |
| AUB84325.1 | Proline iminopeptidase | E | 2.91 | 4.18E-03 |
| AUB82337.1 | Adenylosuccinate synthase | F | 2.54 | 4.44E-02 |
| AUB79762.1 | Ubiquinone biosynthesis regulatory protein kinase UbiB | H | 2.86 | 1.23E-02 |
| AUB80927.1 | uBA THIF-type NAD FAD binding | H | 2.64 | 2.93E-02 |
| AUB83525.1 | Synthase | I | 5.36 | 6.66E-10 |
| AUB81024.1 | Lysyl-tRNA synthetase | J | 3.31 | 1.29E-03 |
| AUB79657.1 | OmpA MotB | M | 5.26 | 9.24E-09 |
| AUB80121.1 | Cell wall formation (By similarity) | M | 3.04 | 3.81E-03 |
| AUB83127.1 | Choloylglycine hydrolase | M | 2.98 | 3.81E-03 |
| AUB83783.1 | Conserved repeat domain protein | M | 2.58 | 4.44E-02 |
| AUB83066.1 | Twitching motility protein | N, U | 3.14 | 3.81E-03 |
| AUB79946.1 | Heat-shock protein | O | 2.65 | 2.93E-02 |
| AUB82608.1 | Endopeptidase La | O | 5.02 | 1.01E-07 |
| AUB85620.1 | DnaK-related protein | O | 2.78 | 1.23E-02 |
| AUB81090.1 | Protein of unknown function (DUF971) | S | 3.55 | 2.26E-04 |
| AUB82842.1 | Dinitrogenase iron-molybdenum cofactor biosynthesis protein | S | 3.30 | 3.81E-03 |
| AUB83253.1 | Nitrogen fixation protein | S | 2.96 | 3.81E-03 |
| AUB83860.1 | Tellurite resistance protein TehB | S | 2.76 | 1.23E-02 |
| AUB83943.1 | Short-chain dehydrogenase reductase SDR | S | 2.91 | 4.18E-03 |
| AUB84318.1 | Transposase | S | 2.99 | 3.81E-03 |
| AUB84331.1 | Dienelactone hydrolase | S | 2.91 | 4.18E-03 |
| AUB85354.1 | Protein of unknown function (DUF2868) | S | 3.78 | 2.26E-04 |
| AUB82296.1 | Ppx GppA phosphatase | T | 2.79 | 1.23E-02 |
| AUB82910.1 | YciI-like protein | T | 2.63 | 2.93E-02 |
| AUB79943.1 | General secretion pathway protein G | U | 2.96 | 3.81E-03 |
| AUB80110.1 | Hypothetical protein | – | 3.21 | 3.81E-03 |
| AUB81753.1 | ATPase | – | 4.76 | 1.20E-06 |
| AUB82624.1 | Hypothetical protein | – | 2.81 | 1.23E-02 |
| AUB82926.1 | Hypothetical protein | – | 2.99 | 3.81E-03 |
Lfdr, local false discovery rate; cat, t-score for each group and feature the cat score of the centroid vs. the pooled mean (Zuber and Strimmer, 2009).