Table 2.
Patients | mRNA change | Protein change | Variant type | Max allele frequency | GERP (prediction of conservation) | Zygosity |
---|---|---|---|---|---|---|
P3 | c.2126+5G>A | - | Splice region variant | 0 | 3.78 | Heterozygous |
P6 | c.1720C>T | p.Arg574Ter | Nonsense | 0 | 2.51 | Homozygous |
P8 | c.1182_1184delATC | p.Leu394_Ser395delinsPhe | Inframe deletion | <0.0001 | 1.37 | Compound heterozygous |
c.368A>G | p.His123Arg | Missense | 0 | 2.5 | ||
P9 | c.1182_1186delATCTT | p.Leu394PhefsTer19 | Frame shift | 0 | 2.71 | Compound heterozygous |
c.1553_1554delAT | p.Tyr518CysfsTer14 | Frame shift | <0.0001 | 3.18 |
The max allele frequency of the variants was from gnomAD and ExAC databases. Polyphen scores were only suitable to assess the pathogenicity of missense mutations, and the Polyphen score of c.368A>G is 0.998, which means likely pathogenic. GERP: Genomic Evolutionary Rate Profiling