Table 1.
Brief introduction of bioinformatics database on m6A research.
| Database name | Description | Data sources | URL | Reference |
|---|---|---|---|---|
| RNAMethPre | A user-friendly web server for m6A site prediction and query for human, mouse, and mammal, broadly. | Single-base resolution m6A site data generated using the miCLIP approach. | http://bioinfo.tsinghua.edu.cn/RNAMethPre/index.html | Xiang et al., 2016 |
| m6AVar | It is a comprehensive database of m6A-associated variants that potentially influence m6A modification, which will help to interpret variants by m6A function. | miCLIP/PA-m6A-seq experiments, MeRIP-Seq experiments and transcriptome-wide predictions. | http://m6avar.renlab.org/ | Zheng et al., 2018 |
| RMBase v2.0 | It is a comprehensive database that integrates epitranscriptome sequencing data for the exploration of post-transcriptional modifications of RNAs and their relationships with miRNA binding events, disease-related single nucleotide polymorphisms (SNPs) and RNA-binding proteins (RBPs). | High-throughput epitranscriptome sequencing data that covered 13 species including humans, mice, zebrafish, yeast, etc. | http://rna.sysu.edu.cn/rmbase/ | Xuan et al., 2018 |
| MeT-DB v2.0 | MeT-DB V2.0 is a comprehensive and significantly enhanced database collecting and integrating more MeRIP-seq samples; It focus more on helping elucidate context-specific m6A functions. | 185 MeRIP-seq samples which come from 26 independent studies covering 7 species. | https://whistle-epitranscriptome.com/metdb_v2/html/genome_browser.php | Liu et al., 2018 |