Table 2. miRNAs of bacteria of the genus Thalassospira identified using miRDeep2.
| miRNA name* | Location | Sequence (5’-3’) | Length (nucleotides) | Number of reads |
|---|---|---|---|---|
| T. australica NP 3b2T | ||||
| T.aust_3p_10018 | JRJE01000008.1_scaffold_30_10018 | TAACGTCTGTCCTTCGGATT | 20 | 2252 |
| T.aust_5p_26441 | JRJE01000032.1_scaffold_0_26441 | CTTGGCAGGCTGGGCGCTCC | 20 | 845 |
| T.aust_3p_11556 | JRJE01000009.1_scaffold_3_11556 | TTTTGACTGGATCGGCAACCGTGAT | 25 | 151 |
| T.aust_5p_26002 | JRJE01000032.1_scaffold_0_26002 | TTTGGCGGGGTCGGGAACC | 19 | 88 |
| T.aust_5p_15617 | JRJE01000022.1_scaffold_18_15617 | ATCCTCTCCCCGCAACCA | 18 | 2888 |
| T.aust_5p_9704 | JRJE01000008.1_scaffold_30_9704 | ATTGGCGTCACAGATCAGGGGCAT | 24 | 15 |
| T.aust_3p_23062 | JRJE01000031.1_scaffold_1_23062 | GAAATCCCTGATCGCGCAG | 19 | 13 |
| T.aust_5p_10770 | JRJE01000009.1_scaffold_3_10770 | ACAAATCTCGGCAAGGCC | 18 | 229 |
| T.aust_5p_13346 | JRJE01000019.1_scaffold_20_13346 | CGAACTCTGCACCAAGGC | 18 | 12 |
| T.aust_5p_22895 | JRJE01000031.1_scaffold_1_22895 | CGAATCTCTCATCACCCACCA | 21 | 4199 |
| T.aust_5p _5988 | JRJE01000005.1_scaffold_5_5988 | AAACCGGATCCTGCAGCC | 18 | 9 |
| T. alkalitolerans JCM 18968T | ||||
| T.alka_5p_5662 | ATWN01000006.1_5662 | TCACCGGTTGGGAAGGCGCTGA | 22 | 15 |
| T.alka_3p_6962 | ATWN01000007.1_6962 | CTTCCCGCCCCATGGCCGA | 19 | 14 |
| T.alka_3p_6323 | ATWN01000007.1_6323 | AATTAATGGGTCCTGACC | 18 | 336 |
| T.alka_5p_4136 | ATWN01000004.1_4136 | TTTCGGGTGGGCAGCGCC | 18 | 1 |
| T.alka_3p_1438 | ATWN01000001.1_1438 | CGCATGGGCGGAGCTTTTCGTTAG | 24 | 13 |
| T.alka_3p_6324 | ATWN01000007.1_6324 | AATTAATGGGTCCTGACC | 18 | 336 |
| T.alka_3p_2121 | ATWN01000002.1_2121 | ATTGATTGCGGCCATCCG | 18 | 11 |
| T.alka_5p_4462 | ATWN01000005.1_4462 | CAAGAACCGCCATCTGCATGCC | 22 | 9 |
| T.alka_5p_1889 | ATWN01000002.1_1889 | ATGCTTTTTGGCCGCATT | 18 | 1 |
| T.alka_3p_75 | ATWN01000001.1_75 | CGAGGTCGAACATGATGAA | 19 | 25 |
| T.alka_5p_3621 | ATWN01000003.1_3621 | ATGTTGCCGGTGCGGCGGCGGGC | 23 | 7 |
| T. lucentensis QMT2T | ||||
| T.luce_5p_27853 | ATWN01000011.1_27853 | CCGAGGTCCGGTATCGCCTGACT | 23 | 13160 |
| T.luce_5p_31831 | ATWN01000015.1_31831 | ATCGTGGCCGCACTGGAGCC | 20 | 907 |
| T.luce_3p_14305 | ATWN01000004.1_14305 | CGCGCAGGCGGGGATCTCGAGC | 22 | 1860 |
| T.luce_5p_11956 | ATWN01000003.1_11956 | ATCGCTGCGGGCAATAAAAGACC | 23 | 60 |
| T.luce_5p _2660 | ATWN01000001.1_2660 | TTACCCGTGAGGTCGGCTGTGCGAT | 25 | 163 |
| T.luce_5p_10500 | ATWN01000003.1_10500 | ATAATGACGTCCGTTGCGAC | 20 | 922 |
| T.luce_3p_13875 | ATWN01000004.1_13875 | AAACGGGGTCGGGGGGCTG | 19 | 3395 |
| T.luce_3p_12006 | ATWN01000003.1_12006 | ACCACAGGTGCGGGCATGGGCATG | 24 | 158 |
| T.luce_5p_14218 | ATWN01000004.1_14218 | AAAGCCCCGGCGCGATTGTCC | 21 | 158 |
| T.luce_3p_14713 | ATWN01000004.1_14713 | TTTGCGCGATGGGTCCCTGAT | 21 | 17 |
| T.luce_3p_22524 | ATWN01000007.1_22524 | TCACAGTCGAGACGCTCTCTCACC | 24 | 50057 |
| T. mesophila JCM 18969T | ||||
| T.meso_5p_3464 | ATWN01000007.1_3464 | ATAAGGAGTAGGCGAATGAGC | 21 | 69 |
| T.meso_3p_3562 | ATWN01000007.1_3562 | TCACAGTCGAGACGCTCTCTCACC | 24 | 10 |
| T.meso_3p_3026 | ATWN01000006.1_3026 | CTTGGCGTCGAAGGCATGA | 19 | 2 |
| T.meso_5p_2868 | ATWN01000006.1_2868 | TTTGGCAAGGCACAGCGCGCAG | 22 | 9 |
| T.meso_3p_3086 | ATWN01000006.1_3086 | CTGCGCGCTGTGCCTTGCC | 19 | 9 |
| T. povalilytica Zumi 95T | ||||
| T.pova_5p_4964 | AMRN01000014.1_4964 | ATCTTTCGATGGTCGTGGCA | 20 | 251 |
| T.pova_5p_4720 | AMRN01000012.1_4720 | CCAAGCGCGGTGCGGACCG | 19 | 21 |
| T.pova_5p_661 | AMRN01000001.1_661 | ATGGGCATCCTGACCGAAGGCACG | 24 | 8 |
| T.pova_5p_390 | AMRN01000001.1_390 | CTTGAAGACCTGCATCAGCGTTC | 23 | 7 |
| T. profundimaris WP0211T | ||||
| T.prof_5p_16873 | AMRN01000003.1_16873 | ACGAATAGCATGTCGATGGC | 20 | 50145 |
| T.prof_5p_35057 | AMRN01000009.1_35057 | ATCGCCTGAACGCGCGCCTGACCG | 24 | 1316 |
| T.prof_5p_36012 | AMRN01000010.1_36012 | GTCCGGTGGTCTGGGCACCATG | 22 | 1679 |
| T.prof_5p_14768 | AMRN01000003.1_14768 | ATCCTGCCCCCGCAACCA | 18 | 721 |
| T.prof_5p_660 | AMRN01000001.1_660 | CTATGCAGACACCCCGGAC | 19 | 1702 |
| T.prof_5p_26017 | AMRN01000006.1_26017 | ATCACGTTGAGCCAAAAGAAAAGC | 24 | 18 |
| T.prof_5p_15266 | AMRN01000003.1_15266 | ATACAACTGATGTCGCCTGC | 20 | 693 |
| T.prof_3p_2147 | AMRN01000001.1_2147 | ATCCTCGGAATAGGTATAGGCTTCC | 25 | 57 |
| T.prof_3p_20338 | AMRN01000004.1_20338 | ATCAATCGCCGGGATCATGATCCC | 24 | 76 |
| T.prof_5p_12543 | AMRN01000002.1_12543 | ATATACGGCCTGGCATAATC | 20 | 2 |
| T.prof_5p_2228 | AMRN01000001.1_2228 | TTTGCGGAATGCCACCCGGCAACG | 24 | 10 |
| T.prof_5p_19418 | 5’ AMRN01000004.1_19418 | GTGTTCTTTTGGTCGCGCATGCCG | 24 | 11 |
| T.prof_3p_6436 | AMRN01000001.1_6436 | AAAAGACCGTCCTGCCACCG | 20 | 6 |
| T.prof_3p_49 | AMRN01000001.1_49 | CTCCTGAGCCGGGCCAAT | 18 | 9 |
| T. tepidiphila 1-1BT | ||||
| T.tepi_5p_8152 | AMRN01000002.1_8152 | ATAATGACGTCCGTTGCGA | 19 | 90 |
| T.tepi_5p_16607 | AMRN01000006.1_16607 | TTCAAGTCTGATGCCCGCGCC | 21 | 9 |
| T.tepi_5p_22622 | AMRN01000010.1_22622 | GTCCGGTGGTCTGGGCACCATG | 22 | 252 |
| T.tepi_5p_2762 | AMRN01000001.1_2762 | GCAGTGGCTTGGCGGGATCGGGAT | 24 | 148 |
| T.tepi_5p_19992 | AMRN01000008.1_19992 | GGGCCGAGATCGAAAGCAACACG | 23 | 17 |
| T.tepi_5p_8570 | AMRN01000003.1_8570 | ATCCTGCCCCCGCAACCA | 18 | 1135 |
| T.tepi_5p_11638 | AMRN01000004.1_11638 | TTTGTCGTTCTGGGCTGGCA | 20 | 12 |
| T.tepi_5p_21088 | AMRN01000009.1_21088 | ATTGATATCGCATCGGTTACCGA | 23 | 65 |
| T.tepi_5p_23416 | AMRN01000011.1_23416 | GTATATTGCCAATTTTGT | 18 | 88 |
| T. xiamenensis M-5T | ||||
| T.xiam_3p_12910 | CP004388.1_12910 | CTTGCCGCCGGTATGCTCGCATC | 23 | 2582 |
| T.xiam_5p_18209 | CP004388.1_18209 | ATGCAGATCGGTTTGCGCACC | 21 | 47 |
| T.xiam_5p_1950 | CP004388.1_1950 | ACGGTTTGCGTCGGTCACGCTGGC | 24 | 331 |
| T.xiam_5p_12633 | CP004388.1_12633 | ATGGACTCCCGCTTTCGC | 18 | 12 |
| T.xiam_5p_12105 | CP004388.1_12105 | ATTTGCATGCCCGTCTGGC | 19 | 13 |
| T.xiam_3p_3097 | CP004388.1_3097 | AGCATTCAAGCATCGGCGGGAT | 22 | 13 |
| T. xianhensis P-4T | ||||
| T.xian_5p_4477 | CP004388.1_4477 | TAGGCGGGAGTCCACCGGGC | 20 | 5 |
| T.xian_3p_19710 | CP004388.1_19710 | GGATCAGCTGGGTAACATC | 19 | 11 |
| T.xian_3p_20546 | CP004388.1_20546 | CTTGCACCGGGCCGCTTTCGGATG | 24 | 14 |
| T.xian_3p_19849 | CP004388.1_19849 | ACGCGACCGCGGCAAGGAAA | 20 | 24 |
| T.xian_5p_25207 | CP004388.1_25207 | AAAGCAGGAAGAATACGAACAGA | 23 | 27 |
| T.xian_5p_31617 | CP004388.1_31617 | ATGCACCCGGACCGAAACCC | 20 | 558 |
| T.xian_3p_3269 | CP004388.1_3269 | AAAGCGCGCCCCCTTGCTCCC | 21 | 43 |
| T.xian_5p_9480 | CP004388.1_9480 | ATTCAGGAATCTGTTCTGACGCAGC | 25 | 26 |
| T.xian_5p_19360 | CP004388.1_19360 | ATTTTAGTCCGCGTCGCAAC | 20 | 13 |
| T.xian_3p_38616 | CP004388.1_38616 | CAAACAGCTGAAGGCCTCCC | 20 | 166 |
| T.xian_3p_35228 | CP004388.1_35228 | ATTCCGATGATCTGGTGATTG | 21 | 11 |
| T.xian_3p_13589 | CP004388.1_13589 | TTGCCGATCATCGCCCTTGCCCTG | 24 | 32 |
| T.xian_5p_34659 | CP004388.1_34659 | CTTCAGTTCCTCGACCTT | 18 | 13 |
| T.xian_3p_4479 | CP004388.1_4479 | CTGACTGGATTCCCGCGT | 18 | 9 |
| T.xian_3p_32022 | CP004388.1_32022 | ATCATGCCGGGCAGATCA | 18 | 8 |
*: The identified miRNAs were named as <name of bacteria>_<location of miRNA in the precursor>_<position of miRNA in the genome>.