Table 1. Chromosome location and positions of SNPs in linkage with genomic regions under selection, measured by changes in allelic diversity (threshold used: ± five standard deviations).
Chromosome | Position on MAGIC genetic map (cM)† | SNP name | Standard deviations from simulated mean |
---|---|---|---|
1A | 88.3 | BS00031066_51 | −12.2 |
1A | 88.8 | BS00021714_51 | −6.4 |
1A | 103.2 | IACX742 | −5.4 |
1A | 112.8 | TA004265_0757 | −7.7 |
1A | 184.8 | BS00032825_51 | 6.3 |
2A | 5.6 | wsnp_Ku_c33374_42877546 | −5.3 |
2A | 18.0 | Excalibur_rep_c110303_320 | −5.4 |
2A | 219.9 | BS00000250_51 | −6.4 |
2A | 221.9 | BS00023202_51 | −7.9 |
2B | 39.4 | BS00064706_51 | −12.6 |
2B | 157.7 | BS00102480_51 | 5.6 |
3A | 153.9 | wsnp_BE494474A_Ta_2_2 | −7.7 |
3A | 194.7 | BS00038663_51 | −6.6 |
3B | 254.8 | BS00022715_51 | −5.8 |
5A | 252.2 | Tdurum_contig13810_485 | −6.7 |
6A | 128.4 | BS00012297_51 | −6.0 |
6B | 57.0 | BobWhite_c10239_519 | −8.8 |
7A | 321.9 | IAAV5268 | −7.9 |
†[20]
Abbreviation: MAGIC, Multi-parent Advanced Generation Inter-Cross; SNP, single nucleotide polymorphism.