Table 3. Summary of patient and virus characteristics for influenza C-positive samples, Germany, 2012–2014 (n = 20 samples).
| Sample ID | Sex | Age | Collection date month-year |
Collected in | Symptoms | FluC Cq | Lineage | Isolate IDa | Co-infection (Cq) |
|---|---|---|---|---|---|---|---|---|---|
| 12–02332b | M | 2y | Mar-12 | Thuringia | ILI | 27 | SP | EPI_ISL_300530 | None |
| 12–02562 | M | 3y | Mar-12 | Thuringia | ILI | 21 | SP | EPI_ISL_300531 | PIV-3 (28) |
| 12–02741 | M | 3y | Mar-12 | Saxony | ILI | 19 | Ka | EPI_ISL_300532 | Influenza A(H3N2) (24) |
| 13–00167 | M | 20m | Oct-12 | Thuringia | ILI | 19 | SP | EPI_ISL_300533 | None |
| 13–00231b | F | 18m | Nov-12 | Bremen | ILI | 35 | NA | NA | PIV-3 (26), AdV (34) |
| 13–00344b | F | 3m | Nov-12 | North Rhine-Westphalia | ILI | 22 | SP | EPI_ISL_300534 | HRV (24) |
| 13–00418 | M | 2y | Nov-12 | Hamburg | ILI | 25 | SP | EPI_ISL_300535 | None |
| 13–00498 | M | 3y | Nov-12 | Schleswig-Holstein | ILI | 30 | SP | EPI_ISL_300536 | CoV OC43 (25) |
| 13–00580b | M | 13m | Nov-12 | Thuringia | ILI | 19 | SP | EPI_ISL_300537 | None |
| 13–00631 | F | 3y | Dec-12 | Baden-Wuerttemberg | ILI | 35 | SP | EPI_ISL_300538 | AdV (22), PIV-3 (30) |
| 13–01570b | M | 11m | Jan-13 | North Rhine-Westphalia | ILI | 36 | NA | NA | None |
| 13–03024 | M | 23m | Feb-13 | Berlin | ARI | 29 | SP | EPI_ISL_300539 | None |
| 13–03232 | F | 8m | Feb-13 | Rhineland-Palatinate | ILI | 39 | NA | NA | RSV-A (23) |
| 13–04022 | M | 19m | Feb-13 | North Rhine-Westphalia | ILI | 29 | SP | EPI_ISL_300540 | None |
| 13–04332 | M | 2y | Mar-13 | Brandenburg | ILI | 25 | SP | EPI_ISL_300541 | Influenza B(Yam) (30) |
| 13–04588 | F | 2y | Mar-13 | Hesse | ILI, pneu | 21 | SP | EPI_ISL_300542 | Influenza A(H3N2) (35) |
| 13–04691b | F | 18m | Mar-13 | Brandenburg | ILI | 25 | SP | EPI_ISL_300543 | HRV (32) |
| 13–05206 | M | 13m | Mar-13 | Brandenburg | ILI | 26 | SP | EPI_ISL_300544 | None |
| 13–05486 | F | 12m | Apr-13 | Brandenburg | ARI | 33 | SP | EPI_ISL_300545 | None |
| 14–03242 | M | 3y | Apr-14 | Rhineland-Palatinate | ILI | 32 | Ka | EPI_ISL_300546 | AdV (19) |
AdV: adenovirus; ARI: acute respiratory infection; CoV: coronavirus; Cq: quantification cycle; F: female; FluC: influenza C virus real-time PCR; HRV: human rhinovirus; GISAID: Global Initiative on Sharing All Influenza Data; ILI: influenza-like illness; Ka: Kanagawa; M: male; m: months; NA: not available (the sequence could not be obtained); PIV: parainfluenza virus; pneu: pneumonia; RSV: respiratory syncytial virus; SP: Sao Paulo; Yam: Yamagata lineage; y: years.
a Deposited at Global Initiative on Sharing All Influenza Data (GISAID).
b ‘Group(add)’ sample according to sampling scheme explained in Supplement S1.