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. Author manuscript; available in PMC: 2019 May 12.
Published in final edited form as: Nature. 2018 Nov 12;563(7732):584–588. doi: 10.1038/s41586-018-0699-5

Extended Data Table 3|.

NAD+ kinetic parameters for hUGDHa

hUGDH Km
(NAD+, mM)
K0.5b
(NAD+, mM)
Hill
(h)
Kcatc
(S-1)
UDX
(Ki, μM)
αnadd # of Data Pointse

FL ------------- 0.8 ± 0.20 0.8 ± 0.1 0.9 ± 0.08 ------------- ------------- 18
ΔID ------------- 0.3 ±0.06 0.6 ± 0.1 0.7 ±0.03 ------------- ------------- 12
FL-dimer 2.0 ± 0.26 ------------- ------------- 0.1 ± 0.01 2.1 ±0.4 0.9 ±0.2 37
ΔID-dimer 3.2 ±0.10 ------------- ------------- 0.2 ±0.01 3.6 ±0.8 0.6 ±0.2 47
R1 ------------- 0.4 ± 0.03 0.9 ±0.1 0.7 ±0.01 ------------- ------------- 17
R2 ------------- 0.8 ±0.14 0.7 ± 0.1 0.7 ±0.01 ------------- ------------- 15
−Lys ------------- 2.9 ±0.61 0.8 ± 0.1 0.6 ±0.04 ------------- ------------- 10
−Pro ------------- 0.5 ±0.06 0.6 ± 0.1 1.2 ±0.03 ------------- ------------- 12
0.13×FL ------------- 0.4 ±0.03 0.7 ± 0.1 1.0 ±0.03 ------------- ------------- 13
0.26×FL ------------- 0.2 ± 0.03 0.8 ± 0.2 0.8 ±0.05 ------------- ------------- 11
0.5×FL ------------- 0.3 ±0.03 0.9 ±0.1 0.9 ±0.02 ------------- ------------- 12
2×FL ------------- 1.4 ±0.31 0.8 ±0.1 0.9 ±0.01 ------------- ------------- 18
0.13×Ser ------------- 0.9 ±0.24 0.7 ±0.1 1.2 ±0.10 ------------- ------------- 12
0.26×Ser ------------- 1.0 ± 0.27 0.7 ± 0.1 1.1 ± 0.09 ------------- ------------- 15
0.5×Ser ------------- 1.2 ±0.34 0.7 ± 0.1 1.1 ± 0.09 ------------- ------------- 13
Ser 1.3 ± 0.19 0.7 ± 0.1 1.0 ± 0.04 ------------- ------------- 13
a

Kinetic parameters and associated standard errors (±) for all constructs were derived from global analyses of data in Extended Data Fig. 2

b

Hexameric hUGDH displays negative cooperativity with NAD+ binding, which indicates a mix of high affinity and low affinity sites2328. In previous work, we showed that the native hUGDHFL K0.5 of 0.8 mM NAD+ corresponds to a mix of high and low affinity sites of (KM of 88 μM and 1.8 mM, respectively)23. This is consistent with the published Kd of 30 μM for the coenzyme24.

c

One catalytic turnover of UDP-GlcA produces two molecules of NADH per cycle

d

α describes the mode of mixed inhibition (Equation 8). An α < 1 in the NAD+ saturation curves show that UDP-Xyl binds preferentially to the allosteric binding, and secondarily to the coenzyme binding site.

e

The number of independent data points used in nonlinear regression (see Methods).