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. 2019 Mar 13;9:4392. doi: 10.1038/s41598-019-40558-x

Table 2.

Metal coordination of adenosine phosphate and thymidine phosphate groups in various structures of AbThiL and AaThiL.

Data set AbThiL AMPPNP, oP AbThiL AMPPNP-TMP, oP AbThiL ADP/TDPTPP, oP AbThiL ADP-/TPDP, mP AaThil AMPPCP/TMP AaThiL ADP/TPP,
PDB code 5CC8 5DD7 5D9U 5CM7 3C9T 3C9U
Adenosine Pα-Pβ Mg2+ Mg2+ Mg2+ Mg2+
Adenosine Pβ-Pγ Mg2/Mg2+ Mg2+/Mg2+ n/a + n/a –/Mg2+ n/a
Adenosine/Thymidine bridge n/a Mg2+/Mg2+ Mg2/Mg2+ Mg2/Ca2+ Mg2+ Mg2+/Mg2+
Thymidine Pα-Pβ n/a n/a Mg2/Mg2+ Ca2/Ca2+ n/a Mg2 +

While there is some plasticity in the metal content, several metal positions appear to be conserved between the structures presented here.