Table 2.
Data set | AbThiL AMPPNP, oP | AbThiL AMPPNP-TMP, oP | AbThiL ADP/TDPTPP, oP | AbThiL ADP-/TPDP, mP | AaThil AMPPCP/TMP | AaThiL ADP/TPP, |
---|---|---|---|---|---|---|
PDB code | 5CC8 | 5DD7 | 5D9U | 5CM7 | 3C9T | 3C9U |
Adenosine Pα-Pβ | Mg2+ | Mg2+ | Mg2+ | Mg2+ | ||
Adenosine Pβ-Pγ | Mg2/Mg2+ | Mg2+/Mg2+ | n/a + | n/a | –/Mg2+ | n/a |
Adenosine/Thymidine bridge | n/a | Mg2+/Mg2+ | Mg2/Mg2+ | Mg2/Ca2+ | Mg2+ | Mg2+/Mg2+ |
Thymidine Pα-Pβ | n/a | n/a | Mg2/Mg2+ | Ca2/Ca2+ | n/a | Mg2 + |
While there is some plasticity in the metal content, several metal positions appear to be conserved between the structures presented here.