Table 2.

Top 30 most significant cis-mQTLs in endometrium

CHR	SNP	BP	A1	BETA	SE	P value	DNAm probe site ID	Probe start (hg19)	Closest TSS gene name
3	rs6783741	43,455,926	T	0.4525	0.00261	2.23E-60	cg11035303	43,465,453	SNRK
4	rs5856334	16,076,153	AT	0.3958	0.002547	1.94E-58	cg17858192	16,077,757	PROM1
3	3:61237223:T:C	61,237,223	T	0.4387	0.002831	2.20E-58	cg17573813	61,237,223	FHIT
14	rs12436555	24,634,825	A	− 0.4469	0.003038	1.85E-57	cg02898977	24,662,177	IPO4
11	rs73555593	107,462,942	A	0.4494	0.003092	3.00E-57	cg22355889	107,461,585	ELMOD1
4	rs6854452	39,446,337	A	0.4824	0.003458	1.62E-56	cg19311470	39,460,490	RPL9
17	rs3833162	27,071,442	G	0.6435	0.004835	1.10E-55	cg04212500	27,184,483	ERAL1
20	rs3764715	1,287,051	A	− 0.3891	0.002947	1.52E-55	cg17341969	1,287,000	SDCBP2
1	rs6697965	220,943,801	C	0.4621	0.003507	1.67E-55	cg12466610	220,950,155	MARCH12
17	rs9897355	80,078,095	G	0.4414	0.003403	3.19E-55	cg25388952	80,084,596	CCDC57
13	rs1040961	40,108,008	G	0.4808	0.003773	6.55E-55	cg17707870	40,107,957	AK021977
5	rs113644940	174,915,503	T	− 0.4505	0.003674	3.16E-54	cg20462978	174,911,722	SFXN1
6	rs660594	31,837,250	G	0.3695	0.003024	3.66E-54	cg20370184	31,838,494	SLC44A4
3	rs76046201	15,365,139	T	− 0.4432	0.003671	5.98E-54	cg09627057	15,377,670	SH3BP5
2	rs6706223	33,944,002	G	0.4451	0.00374	1.07E-53	cg04131969	33,951,597	MYADML
6	rs9380143	29,802,045	T	− 0.4279	0.003698	3.38E-53	cg03570263	30,040,291	RNF39
6	rs138009982	170,453,220	A	0.4388	0.003921	1.33E-52	cg11400162	170,455,448	LOC154449
6	rs72860388	32,904,703	T	− 0.3676	0.003288	1.38E-52	cg21992044	32,918,073	HLA-DMA
7	rs7807520	2,087,545	C	− 0.4547	0.004083	1.63E-52	cg21598190	2,099,404	MAD1L1
9	rs13299342	136,141,504	A	− 0.4277	0.003848	1.74E-52	cg13683939	136,152,547	ABO
1	rs35195267	92,398,884	T	0.3806	0.003438	2.08E-52	cg01081438	92,417,998	BRDT
15	rs376992916	65,245,209	T	− 0.4207	0.003825	2.68E-52	cg25879395	65,272,510	SPG21
8	rs11167041	142,258,889	A	− 0.4478	0.004167	6.95E-52	cg04123498	142,283,514	SLC45A4
8	rs12675160	140,918,110	A	− 0.4302	0.004021	8.29E-52	cg16191297	140,926,659	AX748239
7	rs1108056	101,834,081	A	− 0.4235	0.003977	1.01E-51	cg18088486	101,837,098	SH2B2
7	rs798558	2,758,935	G	− 0.4117	0.003963	2.79E-51	cg17393140	2,764,079	AMZ1
1	rs12074147	40,203,722	C	− 0.4137	0.004	3.35E-51	cg07703391	40,225,995	AB075489
8	rs7822181	10,049,872	T	− 0.4409	0.00427	3.57E-51	cg26077133	10,049,821	MSRA
12	rs7139321	123,719,528	T	0.4135	0.004077	7.40E-51	cg09084244	123,757,810	CDK2AP1
11	rs678679	35,608,275	T	− 0.4807	0.004747	7.90E-51	cg26465155	35,611,044	FJX1