Table 3.

Top 30 most significant cis-mQTLs in blood

CHR	SNP	BP	A1	BETA	SE	P value	DNAm probe Site ID	Probe start (hg19)	Closest TSS gene name
3	rs6783741	43,455,926	T	0.448	0.001743	2.21E-67	cg11035303	43,465,453	SNRK
6	6:29699301:TGAGAGA :TGAGA	29,699,301	TGAGAGA	0.4433	0.002662	1.16E-59	cg27230769	29,705,998	HLA-F-AS1
8	rs12675160	140,918,110	A	− 0.4395	0.002672	1.91E-59	cg16191297	140,926,659	AX748239
15	rs4776894	67,416,445	C	− 0.4491	0.002948	4.42E-58	cg07882838	67,417,557	SMAD3
2	rs6706223	33,944,002	G	0.4457	0.002985	1.00E-57	cg04131969	33,951,597	MYADML
6	rs9380143	29,802,045	T	− 0.4285	0.002918	2.00E-57	cg03570263	30,040,291	RNF39
13	rs1040961	40,108,008	G	0.4481	0.003182	1.10E-56	cg17707870	40,107,957	AK021977
4	rs5856334	16,076,153	AT	0.4034	0.002962	4.31E-56	cg17858192	16,077,757	PROM1
4	rs6854452	39,446,337	A	0.4776	0.003507	4.33E-56	cg19311470	39,460,490	RPL9
11	rs73555593	107,462,942	A	0.4321	0.003249	1.15E-55	cg22355889	107,461,585	ELMOD1
3	rs1054190	119,536,718	T	− 0.3963	0.002991	1.32E-55	cg12414339	119,536,718	NR1I2
1	rs6687657	33,599,737	T	− 0.4317	0.003277	1.68E-55	cg12386614	33,608,003	AX747064
7	rs62444879	2,048,470	G	− 0.4355	0.003316	1.90E-55	cg03723481	2,071,723	MAD1L1
11	rs10750097	116,664,040	G	0.4412	0.003384	2.59E-55	cg12556569	116,663,989	APOA5
19	rs1433089	52,506,985	C	− 0.435	0.003369	3.81E-55	cg01561758	52,514,395	ZNF615
6	rs138009982	170,453,220	A	0.4368	0.003437	7.35E-55	cg11400162	170,455,448	LOC154449
2	rs61702354	25,970,644	A	0.3672	0.002935	1.40E-54	cg17717333	26,101,647	ASXL2
14	rs35595004	52,733,244	A	− 0.4397	0.00357	2.64E-54	cg23022053	52,733,193	PTGDR
10	rs10900074	45,071,312	A	− 0.427	0.003469	2.70E-54	cg02113055	45,072,470	CXCL12
12	rs928993	52,798,364	A	− 0.4268	0.003471	2.83E-54	cg19393008	52,798,313	KRT82
6	rs3130978	31,082,188	A	− 0.4033	0.003301	3.65E-54	cg24926791	31,082,137	PSORS1C1
21	rs1721	46,349,496	T	− 0.4368	0.003577	3.76E-54	cg02464073	46,349,496	ITGB2
9	rs11789671	120,504,614	A	− 0.414	0.003395	3.94E-54	cg21242448	120,510,244	TLR4
11	rs11230502	60,607,476	A	− 0.4072	0.003374	6.09E-54	cg06394820	60,608,241	CCDC86
12	rs7139321	123,719,528	T	0.4466	0.00372	7.49E-54	cg09084244	123,757,810	CDK2AP1
7	rs1108056	101,834,081	A	− 0.4386	0.003676	9.75E-54	cg18088486	101,837,098	SH2B2
1	rs284307	10,739,255	C	− 0.3581	0.003024	1.33E-53	cg13387643	10,737,562	Mir_584
12	rs10777168	76,651,353	C	0.407	0.003444	1.43E-53	cg26864661	76,661,181	BBS10
20	rs6073257	42,561,422	C	0.3894	0.00333	2.19E-53	cg26365090	42,574,362	TOX2
16	rs12149056	58,690,964	A	− 0.4447	0.003819	2.62E-53	cg05876883	58,704,445	SLC38A7