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. 2019 Mar 12;19:243. doi: 10.1186/s12879-019-3857-y

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 5 — The maximum clade credibility (MCC) tree of Indonesian Chikungunya virus. The tree was generated using the Bayesian Markov chain Monte Carlo (MCMC) method as implemented in BEAST using General Time Reversible (GTR) evolution model from E1 sequences. In the analysis, 127 Indonesian chikungunya viruses and 53 representative reference sequences from GenBank were included. All Indonesian Chikungunya viruses, isolated locally (red front) or isolated in neighboring countries (blue front) are grouped into Asian and East/Central/South African (ECSA) genotype