Table 4.
Chikungunya virus genotypes circulating in Indonesia
| Year | Location | Setting | Number of sequences | Genotype (n) | Accession number (GenBank) | Reference |
|---|---|---|---|---|---|---|
| 2015 | Jambi | Non-outbreak | 8 | Asian | KX097981-KX097988 | [86] |
| 2016 | Bali | Outbreak | 6 | Asian | KY885022-KY885027 | [79] |
| 2013 | Indonesia | Exported case | 1 | Asian | KF872195 | [85] |
| 2012 | Bali | Exported case | 1 | Asian | KM673291 | [104] |
| 2011 | Various places | Outbreak | 28 | ECSA (2), Asian (26) | KJ729829-KJ729856 | [13] |
| 2011 | Surabaya | Ae. aegypti male | 2 | Asian | AB678689-AB678690 | [84] |
| 2010–2011 | Surabaya | Non-outbreak | 17 | Asian |
AB678691-AB678695 AB678678-AB678688 |
[84] |
| 2010 | Indonesia | Exported case | 1 | ECSA | KC862329 | [103] |
| 2009 | Indonesia | Exported case | 1 | Asian | FR846307 | [99] |
| 2007-2014a | Indonesia | Exported case | 29 | ECSA (6), Asian (23) | KU561427-KU561432 and KU561436-KU561458 | [23] |
| 2008 | Indonesia | Exported case | 2 | ECSA (1), Asian (1) | FJ445483, FJ445472 | [20] |
| 2007 | Indonesia | Exported case | 1 | Asian | EU192143 | [83] |
| 2007–2008 | Indonesia | Exported case | 7 | Asian | FJ807897, FJ807886-FJ807891 | [101] |
| 2007b | Bandung | Non-outbreak | 3 | Asian | KT175539-KT175541 | [82] |
| 2000–2008 | Bandung | Non-outbreak | 20 | Asian | KC879559-KC879578 | [95] |
| 1985 | Indonesia | Unknown | 1 | Asian | HM045797 | [77] |
| 1985 | Ambon | Unknown | 1 | Asian | AF192894 | [109] |
| 1983 | Indonesia | Unknown | 1 | Asian | HM045791 | [77] |
ECSA East-Central South African gebnotype
a ECSA genotype was isolated during 2009–2010 only
b Sequences are part of non-structural gene