Table 1.
List of genes at least 2-fold-change in non-TNBC (Lum A,B and HER2+) compared to TNBC. Fold change (2^(−Delta Delta Ct) is the normalized gene expression (2^(−Delta Ct)) in the test sample (Lum A, B and HER2+) divided the normalized gene expression (2^(−Delta Ct)) in the control sample (TNBC). The difference is significant at p = .05.
| Gene symbol | Fold difference | Fold up- or down-regulation |
|---|---|---|
| Non-TNBC/TNBC | Non-TNBC/TNBC | |
| ATP5A1 | 2.06 | 2.06 |
| ATP5B | 2.63 | 2.63 |
| ATP5C1 | 1.12 | 1.12 |
| ATP5F1 | 2.69 | 2.69 |
| ATP5G1 | 1.62 | 1.62 |
| ATP5G2 | 2.62 | 2.62 |
| ATP5G3 | 3.21 | 3.21 |
| ATP5H | 3.5 | 3.5 |
| ATP5I | 1.59 | 1.59 |
| ATP5J | 2.22 | 2.22 |
| ATP5J2 | 1.79 | 1.79 |
| ATP5L | 0.77 | −1.3 |
| ATP5O | 2.51 | 2.51 |
| COX4I1 | 2.19 | 2.19 |
| COX5A | 2.01 | 2.01 |
| COX5B | 2.37 | 2.37 |
| COX6A1 | 0.79 | −1.27 |
| COX6A2 | 1.7 | 1.7 |
| COX6B1 | 2.45 | 2.45 |
| COX6C | 2.05 | 2.05 |
| COX7A2 | 1.81 | 1.81 |
| COX7A2L | 1.7 | 1.7 |
| COX7B | 0.76 | −1.31 |
| COX8A | 3.43 | 3.43 |
| CYC1 | 0.85 | −1.17 |
| NDUFA1 | 1.89 | 1.89 |
| NDUFA10 | 1.33 | 1.33 |
| NDUFA11 | 1.52 | 1.52 |
| NDUFA2 | 3.07 | 3.07 |
| NDUFA3 | 1.41 | 1.41 |
| NDUFA4 | 2.18 | 2.18 |
| NDUFA5 | 1 | 1 |
| NDUFA6 | 3.33 | 3.33 |
| NDUFA8 | 2.54 | 2.54 |
| NDUFAB1 | 0.69 | −1.45 |
| NDUFB10 | 3.6 | 3.6 |
| NDUFB2 | 0.84 | −1.19 |
| NDUFB3 | 2.56 | 2.56 |
| NDUFB4 | 5.34 | 5.34 |
| NDUFB5 | 0.56 | −1.79 |
| NDUFB6 | 1.22 | 1.22 |
| NDUFB7 | 2.91 | 2.91 |
| NDUFB8 | 2.6 | 2.6 |
| NDUFB9 | 0.61 | −1.65 |
| NDUFC1 | 2.18 | 2.18 |
| NDUFC2 | 3.18 | 3.18 |
| NDUFS1 | 3.29 | 3.29 |
| NDUFS2 | 0.42 | −2.36 |
| NDUFS3 | 1.3 | 1.3 |
| NDUFS4 | 1.1 | 1.1 |
| NDUFS5 | 1.59 | 1.59 |
| NDUFS6 | 1.72 | 1.72 |
| NDUFS7 | 3.39 | 3.39 |
| NDUFS8 | 3.18 | 3.18 |
| NDUFV1 | 0.77 | −1.31 |
| NDUFV2 | 0.38 | −2.64 |
| NDUFV3 | 1.38 | 1.38 |
| PPA1 | 2.74 | 2.74 |
| SDHA | 1.22 | 1.22 |
| SDHB | 0.93 | −1.08 |
| SDHC | 0.57 | −1.75 |
| SDHD | 1.01 | 1.01 |
| UQCR11 | 3.67 | 3.67 |
| UQCRC1 | 1.69 | 1.69 |
| UQCRC2 | 1.32 | 1.32 |
| UQCRFS1 | 1.18 | 1.18 |
| UQCRH | 0.79 | −1.26 |
| UQCRQ | 3.47 | 3.47 |
| ARRDC3 | 1.22 | 1.22 |
| ASB1 | 2.57 | 2.57 |
| CYB561D1 | 1.68 | 1.68 |
| DNAJB1 | 2.07 | 2.07 |
| EDN1 | 1.42 | 1.42 |
| GADD45B | 5.62 | 5.62 |
| HSPA1A | 1.71 | 1.71 |
| HSPA1B | 0.54 | −1.86 |
| LRP5L | 0.88 | −1.14 |
| MitoH1 | 3.84 | 3.84 |
| MitoH2_12106 | 1.88 | 1.88 |
| MitoH2_14573 | 2.82 | 2.82 |
| MitoH2_4162 | 2.88 | 2.88 |
| MitoH2_5726 | 2.24 | 2.24 |
| RNU11 | 0.29 | −3.41 |
| SLC25A25 | 2.8 | 2.8 |