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. 2019 Mar 14;14(3):e0213280. doi: 10.1371/journal.pone.0213280

Table 1. Table showing identified ARGs among cases using whole genome shotgun sequencing (WGSS) and qPCR assays.

Case WGSS Genes Present qPCR Genes Present
HJ004 mdtE, tet38 Not Tested
HJ006 acrB, acrS, arlR, arlS, blaZ, mdtL, mepA, mepR, msbA, sav1866, tet38, tetQ Not Tested
HJ007 No Detection Not Tested
HJ008 Not Tested aadA1, SHV, DHA, qnr-23 Group, ermB, mefA, tetB, vanB
HJ011 aadA, acrF, arnA, cfxA, ermF, ermX, mdtE, mdtO, tetM, tetO, tetW Not Tested
HJ012 Not Tested SHV(156G), SHV(238G240E), ermB, ermC, mefA, msrA, mecA
HJ013 acrB, arnA, mexB, mexE, mexF, mexK, muxC, oqxB Not Tested
HJ015 Not Tested IMI/NMC-A, SHV(156G), SHV(238S240K), ACT5/7 Group, ermB, ermC, mefA, msrA
HJ018 cfxA, EF-Tu, ermF, hmrM, ileS, mefA, mel, mtrD, parY, patB, msrA
pmrA, rlmA(II), TEM, tetA46, tetA60, tetB46, tetB60, tetM, tetQ
HJ019 cfxA, EF-Tu, ermB, ermF, farA, farB, hmrM, ileS, macA, macB, SFO-1, SHV(238S240K), ermB, ermC, mefA, msrA
mefA, mel, mtrD, mtrR, patB, pmrA, rlmA(II), tetA60, tetB60, tetM
HJ020 Not Tested SHV, SHV(156G), SHV(238G240E), MOX, ermB, ermC, mefA, msrA, tetA, tetB, mecA
HJ021 cfxA, ermF, lsaC, tet32, tetM, tetQ ermB, ermC, mefA, msrA, tetA
HJ022 acrB, arnA, cfxA, cpxR, ermF, ermX, mefA, mel, mexA, mexB, mexC, SHV(238S240K), ermB, mefA, msrA, mecA
mexD, mexE, mexF, mexI, mexK, mexN, mexP, mexQ, mexW, mexY/amrB,
mexY/amrB, muxB, opmH, oprM, PDC, pmpM, smeE, tetQ, tetW, triA, triC
HJ023 acrD, arnA, cfxA, cpxR, EF-Tu, ermB, ermF, ermX, lsaC, mefA, mel, mexB, SHV(156G), ermB, ermC, mefA, msrA, vanB, mecA
mexC, mexD, mexE, mexF, mexI, mexK, mexN, mexP, mexQ, mexW, mexY/amrB,
muxB, opmH, oprM, patB, pmpM, rlmA(II), smeB, tetA60, tetM, tetO, tetW, triA, triC
HJ024 acrB, acrF, pmrE, tetW SHV(156G), SHV(238S240K), ACT 5/7 Group, MOX, OXA-50 Group,
OXA-51 Group, ermB, ermC, mefA, msrA, vanB, mecA
HJ025 cpxR SHV, SHV(156G), SHV(238G240E), MOX, OXA-50 Group, ermB, mefA, oprJ, oprM
HJ026 Not Tested SHV, SHV(156G), SHV(238G240E), MOX
HJ027 mprF, tetA(P), tetB(P) SHV, SHV(156G), SHV(238G240E), MOX, ermB, ermC, mefA, msrA, mecA
HJ028 No Detection ermB, ermC, mefA, msrA, mecA
HJ029 No Detection SHV, SHV(156G), SHV(238G240E), MOX,
ermB, ermC, mefA, msrA, tetA, tetB, vanB, mecA
HJ030 No Detection SHV, SHV(156G), SHV(238G240E), ermB, ermC, mefA, msrA, tetB
HJ031 blaZ, cfxA, ermB, hmrM, mefA, mel, patB, pmrA, Not Tested
rlmA(II), TEM, tetK, tetB46, tetM, tetO, tetW, tetX, vgaA
HJ032 ermF, lsaC, TEM, tetM, tetQ, tetT, tetW Not Tested
HJ033 aad(6), ant(6)-Ia, aph(3')-Ia, aph(3')-IIIa, cfxA, EF-Tu, ermC, Not Tested
ermF, ermG, ermX, ileS, mecR1, parY, sat-4, tetM, tetO, tetQ, tetW
HJ034 aad(6), ant(6)-Ia, aph(3')-IIIa, arlS, blaB, blaZ, cfxA, EF-Tu, ermA, Not Tested
ermC, ermF, ermX, ileS, lsaC, mecR1, mefA, mphC, mtrA, norA, parY,
qacA, qacA/qacB, sat-4, tetK, tetM, tetO, tetQ, tetW, tetX, vgaA
HJ035 Not Tested ermB, mefA, msrA, mecA
HJ036 Not Tested aac(6)-Ib-cr, aadA1, ermB, ermC, mefA, msrA, mecA
HJ037 Not Tested aadA1, DHA, OXA-51 Group, ermB, mefA, msrA, tetB
HJ038 Not Tested ermB, mefA, msrA, tetB, mecA