Table 2.

Comparison results from different methods on two category targets in CASP 9 contest

Category	Predictor	CASP9 protein boundary prediction
		Precision	Recall
FM	DeepDom	0.882	0.468
	ThreaDom	0.882	0.455
	Pfam	0.323	0.485
	FIEFDom	0.231	0.182
	DomPro	0.500	0.182
	PPRODO	0.333	0.485
	DROP	0.429	0.182
Multi-Domain	DeepDom	0.689	0.441
	ThreaDom	0.764	0.534
	Pfam	0.500	0.548
	FIEFDom	0.340	0.233
	DomPro	0.500	0.140
	PPRODO	0.500	0.520
	DROP	0.679	0.260