Prokka 1.12 |
Rapid prokaryotic genome annotation tool |
[24] |
Roary 1.0 |
Rapid large-scale prokaryote pan genome analysis |
[23] |
BLAST+ |
Local alignment search |
[66] |
PSORTb 3.0 |
Prediction of protein subcellular localization |
[30] |
HMMTOP 2.1 |
Prediction of transmembrane topology |
[45] |
DEG |
Database of essential genes to check essentiality. |
[33] |
VFDB |
Virulence factors database for virulence identification |
[39] |
MvirDB |
Microbial virulence database for virulence identification |
[40] |
RefSeq (Human Genome Resources) |
Human genome database for Homology search |
[44] |
ABCPred |
B-Cell epitope prediction |
[49] |
Propred-I |
Prediction of promiscuous major histocompatibility complex (MHC) Class-I binding sites. |
[50] |
Propred |
Prediction of MHC Class-II binding regions in an antigen sequence. |
[51] |
Vaxijen v2.0 |
Antigenicity checking |
[18] |
UniProt-SwissProt |
Manually annotated protein sequences database with information extracted from literature for homology search and functional annotation |
[53] |
COG |
Functional annotation |
[54] |
CARD |
antibiotic resistance analysis |
[55] |