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. Author manuscript; available in PMC: 2019 Jul 1.
Published in final edited form as: DNA Repair (Amst). 2018 Nov 22;73:129–143. doi: 10.1016/j.dnarep.2018.11.010

Table 1-. Sequences of the ODN used in this study.

F: tetrahydrofuran abasic site analog. Nat, S4 and S8 substrates are single strand DNA folded in a G-quadruplex. Poly dT-F is an unstructured DNA single strand. ds-F is the only duplex DNA sequence. All the ODN are labeled with IRDye 800 at the 5’ end.

ODN name Sequences Length of the product
Nat 5’-TAG GGT TAGG GTT AGG GTT AGG G-3’ -
S4 5’-TAG GGT TAFG GTT AGG GTT AGG G −3’ 8 nt
S8 5’-TAG GGT TAGG GTT AGF GTT AGG G-3’ 15 nt
Poly dT-F 5’-TTT TTT TTTT TTT TTF TTT TTT T-3’ 15 nt
ds-F 5’-AAT TCA CCG GTA CCF TCT AGA ATT CG-3’
3’-TTA AGT GGA CAT GGG AGA TCT TAA GC-5’
14 nt
Poly dT 5’-TTT TTT TTTT TTT TTT TTT TTT T-3’ -