Table 2.
List of markers that, aligning against contigs of the first genome draft (Galla et al., 2016), were functionally annotated on the bases of matches with Arabidopsis protein database (TAIR10).
| Marker map reference | GenBank ID | Marker GenBank ID | Marker localization | Gene model name | Predicted function |
|---|---|---|---|---|---|
| E02M093 M4.122 | KX639717 | JF7488313 | Upstream | AT5G50170 | C2 calcium/lipid-binding and GRAM domain containing protein |
| KX639715 | Upstream | AT3G11330 | Plant Intracellular Ras group-related LLR (PIRL) | ||
| KX639716 | Upstream | AT5G63130 | Octicosapeptide/Phox/Bem1p family like protein | ||
| KX639719 | Upstream | AT5G62230 | ERECTA like protein | ||
| MADs box L2/R21 | KX639714 | AF1014201 | Included | AT4G24540 | Agamous-like 24 (AGL24) |
| CAPS marker4 | KX639718 | KX5455840/14 | Upstream (5′ UTR) | AT2G22540 | SVP like protein |
| EU03H011,3 M4.11b2 | KX639711 | KF8808021,2,3 | Downstream | AT1G01620 | Plasma membrane intrinsic like protein |
| EU07G101 M4.10b2 | KX639712 | KX5340814 | Upstream | AT5G39000 | Malectin/receptor-like protein kinase family protein |
| T112924 | na | KX7890694 | Downstream | AT3G61700 | Helicase with zinc finger domain |
| T44034 | na | KX7890704 | Downstream | AT4G27280 | Calcium-binding EF-hand family protein |
| T43904 | na | KX7890714 | na | nd | na |
| T43914 | na | KX7890724 | Included (CDS-synonymous) | AT5G47910 | NADPH/respiratory burst oxidase protein D (RBOHD) |
| T43934 | na | KX7890734 | na | nd | na |
| T43924 | na | KX7890744 | Downstream | AT5G55350 | MBOAT (membrane bound O-acyltransferase) family protein |
| T43994 | na | KX7890754 | Upstream | AT5G61890 | ERF subfamily B-4, from ERF/AP2 transcription factor family. |
| T43944 | na | KX7890764 | na | nd | na |
| T44014 | na | KX7890774 | Downstream | AT3G61420 | BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) |
| T44024 | na | KX7890784 | Included (CDS-non-synonymous) | XP_022024718∗ | Transposase of the MuDR family |
| T44004 | na | KX7890794 | Included (intron) | AT1G15740 | Leucine-rich repeat family protein |
| T43954 | na | KX7890804 | Upstream | AT5G56120 | RNA polymerase II elongation factor |
| T43984 | na | KX7890824 | Included (CDS- synonymous) | AT3G25620 | ABC-2 type transporter family protein (ABCG9) |
1Cadalen et al., 2010; 2Ghedina et al., 2015; 3Barcaccia and Tiozzo Caenazzo, 2012, 2014; 4Present paper; ∗For T4402 is reported the best match with the NR database; na, not available; nd, no significant match detected. Localization of the marker within the genic region is also reported.