Table 2. The CCs identified and the number of isolates by isolation context and listed in the strain selection information.
Minor CCs (i.e. CCs with less than 10 isolates) included CC398, CC11, CC193, CC224, CC403, CC54, CC177, CC19, CC220, CC29, CC77, CC217, CC26, CC379, CC207, CC218, CC388, CC475, CC88, CC89, ST184, ST200, ST32, ST382, ST392, ST560, ST570, ST602, ST736, ST773 and ST839 (ordered according to occurrence).
| CC | Lineage | RTE food | Food-chain processing | Clinical, sporadic | Outbreak related | Total |
|---|---|---|---|---|---|---|
| CC121 | II | 144 | 37 | 6 | 0 | 187 |
| CC9 | II | 81 | 15 | 14 | 0 | 110 |
| CC8 | II | 69 | 5 | 24 | 0 | 98 |
| CC1 | I | 10 | 4 | 50 | 8 | 72 |
| CC2 | I | 19 | 29 | 20 | 0 | 68 |
| CC101 | II | 10 | 41 | 16 | 0 | 67 |
| CC6 | I | 30 | 3 | 28 | 0 | 61 |
| CC155 | II | 32 | 1 | 8 | 13 | 54 |
| CC7 | II | 16 | 4 | 16 | 8 | 44 |
| CC14 | II | 13 | 2 | 9 | 13 | 37 |
| CC4 | I | 1 | 1 | 10 | 24 | 36 |
| CC87 | I | 10 | 0 | 4 | 19 | 33 |
| CC31 | II | 24 | 7 | 1 | 0 | 32 |
| CC3 | I | 18 | 7 | 6 | 0 | 31 |
| CC37 | II | 9 | 15 | 5 | 0 | 29 |
| CC204 | II | 17 | 3 | 1 | 0 | 21 |
| CC59 | I | 10 | 0 | 4 | 4 | 18 |
| CC5 | I | 7 | 6 | 4 | 0 | 17 |
| CC21 | II | 13 | 0 | 2 | 0 | 15 |
| CC20 | II | 8 | 2 | 2 | 0 | 12 |
| CC415 | II | 0 | 2 | 0 | 9 | 11 |
| CC18 | II | 0 | 6 | 4 | 0 | 10 |
| Minor CCs | LI=32 LII=47 |
35 | 9 | 28 | 7 | 79 |
| Total | 576 | 199 |
262 | 105 | 1142 |