Table 2.
Description of genes and their products (according Plant.Essemble.com), associated with the protein-coding SNPs identified in the current study
| SNP-marker (nucleotide substitution) | Chr | Gene code | Gene statistics | Transcript name | Protein statistics |
|---|---|---|---|---|---|
| PotVar0043516 (syn) | 1 | PGSC0003DMG400026032 | Exons: 7, Coding exons: 7, Transcript length: 1938 bps, Translation length: 645 residues | Carotenoid cleavage dioxygenase 7 | Ave. residue weight: 112.975 g/mol Charge: 5.0 Isoelectric point: 7.0484 Molecular weight: 72,869.07 g/mol Number of residues: 645 aa |
| PotVar0043426 (syn) solcap_snp_c2_17529 (syn) |
1 | PGSC0003DMG400026030 | Exons: 20, Coding exons: 20, Transcript length: 3574 bps, Translation length: 760 residues | Mitochondrial elongation factor | Ave. residue weight: 110.614 g/mol Charge: 1.0 Isoelectric point: 6.6146 Molecular weight: 84,066.49 g/mol Number of residues: 760 aa |
| solcap_snp_c2_17530 (syn) solcap_snp_c1_5759 (syn) |
1 | PGSC0003DMG400026029 | Exons: 7, Coding exons: 7, Transcript length: 1297 bps, Translation length: 332 residues | Malate dehydrogenase | Ave. residue weight: 109.454 g/mol Charge: 15.5 Isoelectric point: 9.8591 Molecular weight: 36,995.61 g/mol Number of residues: 338 aa |
| solcap_snp_c1_2519 (Val < => Ile) |
1 | PGSC0003DMG402018257 | Exons: 3, Coding exons: 3 Transcript length: 3145 bps Translation length: 386 residues |
Leucine-rich repeat-containing protein | Ave. residue weight: 114.581 g/mol Charge: − 0.5 Isoelectric point: 6.4430 Molecular weight: 62,103.08 g/mol Number of residues: 542 aa |
| PotVar0084444 (syn) | 4 | PGSC0003DMG400024812 | Exons: 10, Coding exons: 9, Transcript length: 1841 bps, Translation length: 408 residues | Maltose transporter | Ave. residue weight: 111.048 g/mol Charge: 17.5 Isoelectric point: 9.9764 Molecular weight: 45,307.70 g/mol Number of residues: 408 aa |
| solcap_snp_c2_38828 (syn) | 7 | PGSC0003DMG400011132 | Exons: 9, Coding exons: 9, Transcript length: 1768 bps, Translation length: 496 residues | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase | Ave. residue weight: 107.120 g/mol Charge: 3.5 Isoelectric point: 7.1101 Molecular weight: 53,131.55 g/mol Number of residues: 496 aa |
| solcap_snp_c1_6252 (syn) | 8 | PGSC0003DMG400029895 | Exons: 11, Coding exons: 10, Transcript length: 2175 bps, Translation length: 529 residues | Importin alpha | Ave. residue weight: 110.400 g/mol Charge: − 11.5 Isoelectric point: 4.9041 Molecular weight: 58,401.63 g/mol Number of residues: 529 aa |
| PotVar0065745 (syn) | 10 | PGSC0003DMG401011292 | Exons: 4, Coding exons: 4, Transcript length: 1128 bps, Translation length: 375 residues | Strong similarity to naringenin 3-dioxygenase | Ave. residue weight: 112.754 g/mol Charge: − 20.5 Isoelectric point: 4.3935 Molecular weight: 42,282.69 g/mol Number of residues: 375 aa |
| PotVar0065847 (syn) | 10 | PGSC0003DMG400011295 | Exons: 6, Coding exons: 6, Transcript length: 957 bps, Translation length: 180 residues | Thylakoid membrane phosphoprotein 14 kDa, chloroplastic | Ave. residue weight: 105.760 g/mol Charge: 1.0 Isoelectric point: 7.7746 Molecular weight: 19,036.87 g/mol Number of residues: 180 aa |
| solcap_snp_c1_2187 | 11 | PGSC0003DMG400016217 | Exons: 1, Coding exons: 1, Transcript length: 1766 bps, Translation length: 393 residues | Ring finger protein | Ave. residue weight: 113.742 g/mol Charge: − 8.5 Isoelectric point: 5.1056 Molecular weight: 44,700.59 g/mol Number of residues: 393 aa |
Syn synonymous, Val valine, Ile isoleucine