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. Author manuscript; available in PMC: 2019 Oct 22.
Published in final edited form as: Biochem J. 2018 Oct 22;475(20):3221–3238. doi: 10.1042/BCJ20180424

Table 1. Steady-state kinetic parameters for the normal reaction catalyzed by IDH1, conversion of ICT to αKG, and for the neomorphic reaction catalyzed by IDH1, conversion of αKG to D2HG.

At least two enzyme preparations were used to obtain kobs rates (at 37°C), which were plotted against substrate concentration and fit to a hyperbolic function. The SE shown is determined from the deviation resulting from hyperbolic fits of plots of kobs versus substrate concentration in order to calculate catalytic efficiency (kcat/KM, mM−1 s−1). In some cases, maximal rates were still achieved at concentrations of NADPH that approached the limit of detection, and thus, KM values are listed as ≤ or < than the lowest concentration tested.

IDH1 kcat (s−1), ICT → αKG KM, ICT (mM) ICT → αKG KM, NADP+ (mM) ICT → αKG kcat/KM (mM−1 s−1) ICT → αKG kcat (s−1) αKG → D2HG KM, αKG (mM) αKG → D2HG KM, NADPH (mM) αKG → D2HG kcat/KM (mM−1 s−1) αKG → D2HG
WT [17] 85 ± 4 0.22 ± 0.02 0.08 ± 0.03 3.9 × 102 ± 0.4 × 102 0.019 ± 0.001 0.5 ± 0.3 <0.010 0.04 ± 0.02
R132H [17] 2.4 ± 0.1 4.2 ± 0.6 1.6 ± 0.5 0.57 ± 0.08 1.44 ± 0.051 1.5 ± 0.21 <0.025 1.0 ± 0.11
R132C [17] 4.4 ± 0.1 8.2 ± 0.8 0.75 ± 0.07 0.54 ± 0.05 1.60 ± 0.07 0.36 ± 0.05 0.010 ± 0.009 4.4 ± 0.6
R132G [17] 9.3 ±0.6 7 ± 1 0.067 ± 0.007 1.3 ± 0.2 1.59 ± 0.09 0.34 ± 0.08 <0.025 5 ± 1
R132Q [17] 9.2 ±0.3 0.8 ± 0.2 0.22 ± 0.052 12 ± 3 4.7 ± 0.2 0.26 ± 0.04 <0.0052 18 ± 3
R132L 4.0 ± 0.1 2.2 ± 0.2 0.055 ± 0.009 1.8 ± 0.2 0.79 ± 0.05 0.05 ± 0.01 <0.005 16 ± 3
R132S 5.6 ± 0.2 3.9 ± 0.7 0.059 ± 0.009 1.4 ± 0.3 1.32 ± 0.07 0.20 ± 0.04 <0.005 7 ± 1
R132V 1.38 ± 0.09 1.6 ± 0.4 0.073 ± 0.008 0.9 ± 0.2 1.10 ± 0.01 0.134 ± 0.006 <0.005 8.2 ± 0.4
1

Additional measurements have led to slight adjustment in previously reported values.

2

Not reported previously.