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. Author manuscript; available in PMC: 2019 Mar 18.
Published in final edited form as: Mol Inform. 2010 Apr 20;29(4):276–286. doi: 10.1002/minf.201000017

Table 1. List of templates that were used for homology models of P-glycoprotein.

Template Organsim Sequence Identitiy/Similarity[a] Co-crystal[b] PDB Code Resolution [Å] Reference Homology Models
MsbA E. coli 36%/57% Apo-open[c] 1JSQ 4.50 [15] Retracted [52, 64, 65]
MsbA V. cholerae 33%/55% Apo-closed[d] 1PF4 3.80 [66] Retracted [67]
MsbA S. typhimurium 37%/57% ADP·Vi 1Z2R 4.20 [68] Retracted
Sav1866 S. aureus 34%/52% ADP 2HYD 3.00 [48] [6974]
MsbA E. coli 36%/57% Apo-open 3B5W 5.30 [60] [75]
MsbA V. cholerae 33%/55% Apo-closed 3B5X 5.50 [60] [72]
MsbA S. typhimurium 37%/57% AMP-PNP 3B5Y 4.50 [60]
MsbA S. typhimurium 37%/57% ADP·Vi 3B5Z 4.20 [60]
MsbA S. typhimurium 37%/57% AMP-PNP 3B60 3.70 [60] [72]
MalK E. coli 31%/50% Apo-semi open 1Q1B 2.80 [73] [73]
MalK E. coli 31%/50% Apo-open 1Q1E 2.90 [73] [73]
ABCB1 M. musculus 87%/93% Apo-closed 3G5U 3.80 [16] [76, 77]
ABCB1 M. musculus 87%/93% QZ59-RRR 3G60 4.40 [16]
ABCB1 M. musculus 87%/93% QZ59-SSS 3G61 4.35 [16] [78]
[a]

Sequence Identity/Similarity with human P-glycoprotein[79].

[b]

Co-crystallized molecules (Nucleotides, drugs or apo).

[c]

Apo-open describes the nucleotide-free protein with the NBDs far apart.

[d]

Apo-closed describes the nucleotide-free protein with NBDs that lie close together