Table 1. List of templates that were used for homology models of P-glycoprotein.
| Template | Organsim | Sequence Identitiy/Similarity[a] | Co-crystal[b] | PDB Code | Resolution [Å] | Reference | Homology Models |
|---|---|---|---|---|---|---|---|
| MsbA | E. coli | 36%/57% | Apo-open[c] | 1JSQ | 4.50 | [15] Retracted | [52, 64, 65] |
| MsbA | V. cholerae | 33%/55% | Apo-closed[d] | 1PF4 | 3.80 | [66] Retracted | [67] |
| MsbA | S. typhimurium | 37%/57% | ADP·Vi | 1Z2R | 4.20 | [68] Retracted | |
| Sav1866 | S. aureus | 34%/52% | ADP | 2HYD | 3.00 | [48] | [69–74] |
| MsbA | E. coli | 36%/57% | Apo-open | 3B5W | 5.30 | [60] | [75] |
| MsbA | V. cholerae | 33%/55% | Apo-closed | 3B5X | 5.50 | [60] | [72] |
| MsbA | S. typhimurium | 37%/57% | AMP-PNP | 3B5Y | 4.50 | [60] | |
| MsbA | S. typhimurium | 37%/57% | ADP·Vi | 3B5Z | 4.20 | [60] | |
| MsbA | S. typhimurium | 37%/57% | AMP-PNP | 3B60 | 3.70 | [60] | [72] |
| MalK | E. coli | 31%/50% | Apo-semi open | 1Q1B | 2.80 | [73] | [73] |
| MalK | E. coli | 31%/50% | Apo-open | 1Q1E | 2.90 | [73] | [73] |
| ABCB1 | M. musculus | 87%/93% | Apo-closed | 3G5U | 3.80 | [16] | [76, 77] |
| ABCB1 | M. musculus | 87%/93% | QZ59-RRR | 3G60 | 4.40 | [16] | |
| ABCB1 | M. musculus | 87%/93% | QZ59-SSS | 3G61 | 4.35 | [16] | [78] |
Sequence Identity/Similarity with human P-glycoprotein[79].
Co-crystallized molecules (Nucleotides, drugs or apo).
Apo-open describes the nucleotide-free protein with the NBDs far apart.
Apo-closed describes the nucleotide-free protein with NBDs that lie close together