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. Author manuscript; available in PMC: 2019 Mar 18.
Published in final edited form as: FEBS J. 2009 Feb;276(4):964–972. doi: 10.1111/j.1742-4658.2008.06832.x

Table 2.

Quality assessment of the final energy minimized model.

Total potential energy −6.5e + 04 kJ⋅mol−1
proq
    LGscore 5.621 (extremely good model)
    MaxSub 0.312 (very good model)
prosaii
    Z-score −12.38
procheck
    Ramachandran (%)
        Most favourable   94.3
        Additionally allowed     5.3
        Generously allowed     0.2
        Disallowed     0.2
    G-factor
        Dihedral   −0.04
        Covalent     0.19
        Overall     0.06
whatcheck
    Structure Z-scores
        1st generation packing quality   −0.137
        2nd generation packing quality   −0.836
        Ramachandran plot appearance     0.152
        chi-1/chi-2 rotamer normality   −1.644
        Backbone conformation   −0.652
    Rms Z-scores
        Bond lengths     0.706
        Bond angles     1.073
        Omega angle restraints     0.168 (tight)
        Side-chain planarity     1.718
        Improper dihedral distribution     2.508 (loose)
        Inside/outside distribution     1.141