Table 1.
Top 50 transcripts enriched in mpeg1:GFP+ cells compared to GFP− retinal cells at 7 days post ouabain lesion, sorted by FDR.
| moderated log2FC | FDR | GENE NAME | SYMBOL | ZFIN | ENTREZID |
|---|---|---|---|---|---|
| 6.947697132 | 8.29E-48 | apolipoprotein C-I | apoc1 | ZDB-GENE-030131-1074 | 570638 |
| 6.935549678 | 1.21E-38 | solute carrier family 43, member 3b | slc43a3b | ZDB-GENE-060312-28 | 556206 |
| 9.744245899 | 2.75E-37 | regulator of G protein signaling 18 | rgs18 | ZDB-GENE-061013-722 | 768164 |
| 8.364686368 | 9.84E-37 | chemokine (C-C motif) ligand 34b, duplicate 1 | ccl34b.1 | ZDB-GENE-091204-276 | 563952 |
| 9.292757461 | 1.03E-36 | hepatitis A virus cellular receptor 1 | havcr1 | ZDB-GENE-040718-131 | 436707 |
| 5.714666395 | 2.75E-36 | lectin, galactoside-binding, soluble, 9 (galectin 9)-like 1 | lgals9l1 | ZDB-GENE-030131-9543 | 337597 |
| 10.82966572 | 4.22E-34 | uncharacterized LOC100150882 | LOC100150882 | NA | 100150882 |
| 6.712331301 | 6.09E-32 | CD74 molecule, major histocompatibility complex, class II invariant chain b | cd74b | ZDB-GENE-990910-10 | 30645 |
| 5.887950241 | 4.26E-30 | CD74 molecule, major histocompatibility complex, class II invariant chain a | cd74a | ZDB-GENE-000901-1 | 58113 |
| 8.897462506 | 2.20E-29 | solute carrier family 7 (amino acid transporter light chain, y+ L system), member 7 | slc7a7 | ZDB-GENE-051127-5 | 641560 |
| 6.139928731 | 1.38E-28 | si:busm1-266f07.2 | si:busm1-266f07.2 | ZDB-GENE-030616-436 | 368878 |
| 8.549659679 | 6.09E-27 | interleukin 10 receptor, alpha | il10ra | ZDB-GENE-070905-4 | 777651 |
| 8.850007997 | 6.13E-26 | integrin, alpha E, tandem duplicate 1 | itgae.1 | ZDB-GENE-131121-125 | 100333951 |
| 8.699101471 | 1.84E-25 | si:ch73-203a8.1 | si:ch73-203a8.1 | ZDB-GENE-070912-335 | 100151151 |
| 10.15171232 | 1.04E-24 | protein NLRC3-like | LOC100334101 | NA | 100334101 |
| 8.913425562 | 1.79E-24 | interleukin-1 receptor type 2 | LOC101882195 | NA | 101882195 |
| 5.61985783 | 1.81E-24 | complement component 1, q subcomponent, B chain | c1qb | ZDB-GENE-040801-223 | 445088 |
| 6.670581809 | 3.36E-24 | G0/G1 switch 2 | g0s2 | ZDB-GENE-081022-103 | 568476 |
| 6.506472448 | 5.92E-24 | retinol binding protein 2a, cellular | rbp2a | ZDB-GENE-020320-2 | 568032 |
| 4.928284874 | 1.57E-23 | profilin 1 | pfn1 | ZDB-GENE-031002-33 | 799355 |
| 6.183866184 | 2.84E-23 | lymphocyte cytosolic protein 1 (L-plastin) | lcp1 | ZDB-GENE-991213-5 | 30583 |
| 8.504782713 | 7.69E-22 | macrophage receptor with collagenous structure | marco | ZDB-GENE-120514-2 | 571584 |
| 6.059783514 | 7.69E-22 | granulin 1 | grn1 | ZDB-GENE-060103-1 | 553977 |
| 8.067781947 | 7.85E-22 | macrophage expressed 1, tandem duplicate 1 | mpeg1.1 | ZDB-GENE-030131-7347 | 335407 |
| 4.183893764 | 9.14E-22 | CCAAT/enhancer binding protein (C/EBP), beta | cebpb | ZDB-GENE-020111-3 | 140814 |
| 9.25435495 | 6.52E-21 | si:ch211-102c2.4 | si:ch211-102c2.4 | ZDB-GENE-030131-8862 | 568178 |
| 4.122049372 | 8.44E-21 | fatty acid binding protein 11a | fabp11a | ZDB-GENE-040912-132 | 447944 |
| 4.958997926 | 1.18E-20 | coronin, actin binding protein, 1 A | coro1a | ZDB-GENE-030131-9512 | 100002113 |
| 5.179139762 | 2.01E-20 | Fc receptor, IgE, high affinity I, gamma polypeptide like | fcer1gl | ZDB-GENE-070502-4 | 100101653 |
| 7.846346992 | 3.41E-20 | connexin 32.2 | cx32.2 | ZDB-GENE-050303-1 | 566647 |
| 4.234645883 | 4.88E-20 | cathepsin C | ctsc | ZDB-GENE-030619-9 | 368704 |
| 4.507055275 | 5.17E-20 | legumain | lgmn | ZDB-GENE-021030-1 | 406625 |
| 8.734468946 | 7.90E-20 | GRB2-related adaptor protein a | grapa | ZDB-GENE-050522-347 | 553596 |
| 8.9405533 | 1.04E-19 | interleukin-1 family member A | il1fma | ZDB-GENE-140106-231 | 102997062 |
| 6.437918568 | 1.35E-19 | lectin, galactoside-binding, soluble, 3 binding protein b | lgals3bpb | ZDB-GENE-040426-2262 | 405809 |
| 8.410056881 | 1.51E-19 | neutrophil cytosolic factor 1 | ncf1 | ZDB-GENE-031006-6 | 378966 |
| 7.080422693 | 2.03E-19 | apoptosis facilitator Bcl-2-like protein 14 | LOC101885512 | NA | 101885512 |
| 6.427189127 | 3.22E-19 | chemokine (C-X-C motif) ligand 19 | cxcl19 | ZDB-GENE-140708-2 | 100003911 |
| 6.677182232 | 4.15E-19 | integrin, beta 2 | itgb2 | ZDB-GENE-110411-4 | 557797 |
| 8.305047042 | 5.60E-19 | si:dkey-88j15.3 | si:dkey-88j15.3 | ZDB-GENE-100922-28 | 560795 |
| 4.407928906 | 7.81E-19 | GM2 ganglioside activator | gm2a | ZDB-GENE-050417-373 | 550529 |
| 4.341624501 | 1.03E-18 | Rho GDP dissociation inhibitor (GDI) gamma | arhgdig | ZDB-GENE-040426-1493 | 394132 |
| 7.971312316 | 1.07E-18 | si:cabz01074946.1 | si:cabz01074946.1 | ZDB-GENE-160113-134 | 100331505 |
| 7.338888853 | 1.15E-18 | lysosomal-associated protein transmembrane 5 | LOC100151049 | NA | 100151049 |
| 7.269771345 | 1.15E-18 | protein tyrosine phosphatase, non-receptor type 6 | ptpn6 | ZDB-GENE-030131-7513 | 335573 |
| 9.665266832 | 2.03E-18 | cytotoxic and regulatory T-cell molecule | crtam | NA | 101884219 |
| 6.67300911 | 2.46E-18 | tumor necrosis factor b (TNF superfamily, member 2) | tnfb | ZDB-GENE-050601-2 | 554167 |
| 5.681315201 | 1.12E-17 | glutathione S-transferase omega 2 | gsto2 | ZDB-GENE-041114-67 | 492500 |
| 4.081012634 | 1.44E-17 | sequestosome 1 | sqstm1 | ZDB-GENE-040426-2204 | 406452 |
| 6.184453342 | 1.62E-17 | IL-6 subfamily cytokine M17 | m17 | ZDB-GENE-060526-368 | 555717 |