Table 5.
Genes implicated in secondary metabolism in the strains of study and closest type strains detected by RAST subsystems.
| Isolate LB4 | Isolate LB19 | Isolate LB32T | Isoalte LB39T | Isolate LB41 | M. chalcea DSM 43026T | M. saelicesensis Lupac 09T | ||
|---|---|---|---|---|---|---|---|---|
| Secondary metabolism | 9 | 10 | 6 | 19 | 17 | 10 | 4 | |
| Thiazole- oxazole-modified microcin (TOMM) synthesis | 5 | 4 | 0 | 3 | 7 | 3 | 0 | |
| TOMM biosynthesis dehydrogenase (protein B) | 1 | 1 | 0 | 1 | 2 | 1 | 0 | |
| TOMM biosynthesis cyclodehydratase (protein C) | 2 | 1 | 0 | 1 | 2 | 1 | 0 | |
| TOMM biosynthesis docking scaffold (protein D) | 2 | 1 | 0 | 1 | 2 | 1 | 0 | |
| FIG214983: hypothetical protein | 0 | 0 | 0 | 0 | 1 | 0 | 0 | |
| SagD family docking scaffold | 0 | 1 | 0 | 0 | 0 | 0 | 0 | |
| Lanthionine synthetases | 4 | 5 | 6 | 16 | 6 | 7 | 4 | |
| LanB | Lanthionine biosynthesis protein LanB | 1 | 1 | 0 | 2 | 1 | 1 | 0 |
| LanC | Lanthionine biosynthesis cyclase LanC | 0 | 1 | 0 | 2 | 0 | 1 | 0 |
| MT | O-methyltransferase clustered with LanBC | 1 | 0 | 0 | 1 | 1 | 0 | 0 |
| IsoAspMT | Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) | 2 | 2 | 3 | 8 | 3 | 3 | 1 |
| LanL | Lanthionine biosynthesis protein LanL | 0 | 1 | 0 | 1 | 1 | 1 | 1 |
| LanM | Lanthionine biosynthesis protein LanM | 0 | 0 | 3 | 0 | 0 | 0 | 2 |
| HP1 | Hypothetical protein associated with LanBC | 0 | 0 | 0 | 2 | 0 | 1 | 0 |
| Clavulanic acid biosynthesis | 0 | 1 | 0 | 0 | 0 | 0 | 0 | |
| CAD | Clavaldehyde dehydrogenase | 0 | 1 | 0 | 0 | 0 | 0 | 0 |