Table 2.

Comparisons of QTL region/QTN for seedling vigor detected by two different methods (GAPIT and mrMLM).

Traita	Stageb	SNP_based			Loci_based
		GAPIT	mrMLM	Overlap	GAPIT	mrMLM	Overlap
TN	A	23	13	12	15	10	9
	B	20	14	14	11	7	7
	C	22	16	15	15	12	11
PH	A	68	31	31	20	12	12
	B	82	39	37	26	18	18
	C	60	24	24	21	11	11
DW	A	61	33	33	18	10	10
	B	19	12	12	12	8	8
	C	28	16	15	8	7	6
Total Subtotalc		383	198	193	41	42	41

^aTN = Tiller number, PH = Plant height, and DW = dry weight, respectively.

^bA, B, C = Sampling on 27, 34, and 41 days after seeding, respectively.

^cThe number of loci excludes the duplicated counts of loci by different traits at different stages.