Table 3.
Whole-Genome Sequencing SNPs and Annotation
| Position | Gene | Product | Change | Ref | FCH-1 | LTC 15B |
LTC 15 |
LTC36 | LTC 36 |
LTC 39A |
FCH 2 |
LTC 10 |
LTC 15A |
LTC 44 |
LTC 5A |
LTC 7B |
FCH 4 |
LTC 14 |
LTC 14 |
LTC 19 |
LTC 39 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120932 | CDR20291_0096 | DNA-directed RNA polymerase alpha chain | Synonymous | C | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A |
| 132939 | Intergenic | G | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | ||
| 132955 | Intergenic | C | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | ||
| 132958 | Intergenic | T | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | ||
| 132959 | Intergenic | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | ||
| 490091 | Intergenic | G | G | G | G | G | G | G | T | T | G | G | G | G | G | G | G | G | G | ||
| 490092 | Intergenic | T | T | T | T | T | T | T | C | C | T | T | T | T | T | T | T | T | T | ||
| 630219 | CDR20291_0515 | Hypothetical protein | Synonymous | G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A |
| 685120 | Intergenic | A | A | A | A | A | A | A | G | G | G | G | G | G | A | A | A | A | A | ||
| 685442 | CDR20291_0565 | Two-component response regulator | Synonymous | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T |
| 737734 | CDR20291_0596 | Conserved hypothetical protein | Non-synonymous | G | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T |
| 904356 | CDR20291_0735 | Electron transfer flavoprotein beta-subunit | Non-synonymous | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C |
| 1116866 | CDR20291_0901 | Putative membrane protein (pseudogene) | Non-synonymous | G | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T |
| 1138198 | CDR20291_0925 | Hypothetical protein | Non-synonymous | C | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A |
| 1411909 | Intergenic | G | G | G | G | G | G | G | G | G | G | G | G | G | T | G | G | G | G | ||
| 1547553 | CDR20291_1308 | Putative 5-nitroimidazole reductase | Non-synonymous | T | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G |
| 1592813 | Intergenic | A | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | ||
| 1662523 | CDR20291_1406 | Putative peptidyl-prolyl isomerase | Non-synonymous | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C |
| 1713234 | CDR20291_1451 | Putative phage cell wall hydrolase | Non-synonymous | T | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G |
| 1865639 | CDR20291_1579 | TetR-family transcriptional regulator | Non-synonymous | T | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A |
| 1866352 | Intergenic | T | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | ||
| 1876233 | CDR20291_1593 | Putative arsenical pump membrane protein | Non-synonymous | A | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C |
| 2061408 | CDR20291_1766 | transcription regulator (yobd protein) | Synonymous | C | C | C | C | C | C | A | C | C | C | C | C | C | C | C | C | C | C |
| 2076479 | Intergenic | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | ||
| 2160266 | CDR20291_1848 | Putative peptidase | Non-synonymous | T | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G |
| 2247604 | CDR20291_1924 | Putative uncharacterized protein | Non-synonymous | G | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T |
| 2297364 | CDR20291_1968 | Conserved hypothetical protein | Synonymous | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G |
| 2297662 | CDR20291_1968 | Conserved hypothetical protein | Non-synonymous | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C |
| 2322226 | CDR20291_1987 | Putative FAD-binding subunit of xanthine dehydrogenase | Synonymous | G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A |
| 2361948 | Intergenic | C | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | ||
| 2387569 | CDR20291_2036 | Putative membrane-associated protease | Non-synonymous | C | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A |
| 2576495 | Intergenic | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | ||
| 2582507 | Intergenic | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | ||
| 2976764 | CDR20291_2541 | UDP-N-acetylmuramoylalanine-D-glutamate ligase | Non-synonymous | G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A |
| 3055365 | CDR20291_2602 | UDP-glucose 4-epimerase | Non-synonymous | T | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A |
| 3057112 | CDR20291_2605 | Hypothetical protein | Non-synonymous | T | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G |
| 3113416 | CDR20291_2644 | PTS system, phosphocarrier protein | Non-synonymous | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
| 3164340 | CDR20291_2682 | Cell surface protein (S-layer precursor protein) | Non-synonymous | C | C | C | C | C | C | C | T | T | C | C | C | C | C | C | C | C | C |
| 3531583 | CDR20291_2969 | PTS system, IIabc component | Non-synonymous | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T |
| 3715797 | Intergenic | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | ||
| 4104562 | CDR20291_3456 | Putative uncharacterized protein | Synonymous | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A | G | G |
| 4112001 | CDR20291_3464 | Conjugative transposon protein | Non-synonymous | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | G |
| 4147900 | CDR20291_3497 | Hypothetical protein | Synonymous | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G |