Table 8. Data sets used in this study.
| System | Resolution, Å | EMDB | Deposited PDB | Method | Citation |
|---|---|---|---|---|---|
| Aldolase | 2.6 | 8743 | 5VY3 | Rosetta/Phenix | Herzik et al. (2017) |
| Tubulin | 4.1 | n/a* | 3JAS, 6DPV | COOT/Refmac | Zhang and Nogales (2015) |
| TRPV1 | 3.3 (2.5–7) | 5778 | 3J5P | COOT | Liao et al. (2013) |
| TRPV1 (TM) | <3.3† | 5778 | 3J9J | Rosetta | Barad et al. (2015) |
| TRPV1 (mono) | 3.3 (2.5–7) | 5778 | n/a‡ | ReMDFF | Wang et al. (2018) |
| NSF | 3.9 | 9102 | 6MDO | COOT/Phenix§ | White et al. (2018) |
| Nucleosome | 3.7 | 3947 | 6ESF | COOT/Phenix | Bilokapic et al. (2018) |
| CorA | 7.1 | 6552 | 3JCG | COOT/Phenix | Matthies et al. (2016) |
| 70S Ribosome | 3.4 | 4124 | 5LZD | COOT/Rosetta/Phenix | Fischer et al. (2016) |
*Map segment derived from an asymmetric, 14-protofilament, kinesin-decorated microtubule reconstruction (provided by courtesy of R. Zhang).
†TM region of TRPV1 has a much higher resolution than ARDs.
‡Provided by courtesy of S. Wang.
§Optimized Phenix protocol was used (Afonine et al., 2018; White et al., 2018) that differed from that used for the other systems (Adams et al., 2010).