Antibodies |
|
Rabbit anti-Brn3a |
Millipore |
Cat# AB5945; RRID: AB_92154
|
Chicken anti-NF200 |
Abcam |
Cat# ab4680; RRID: AB_304560
|
Rabbit anti-HA |
Cell Signaling Technology |
Cat# 3724; RRID: AB_1549585
|
Mouse anti-HA |
Sigma-Aldrich |
Cat# A2095; RRID: AB_257974
|
Mouse anti-Beta-Actin |
Sigma-Aldrich |
Cat# A5316; RRID: AB_476743
|
Rat anti-MBP |
Abcam |
Cat# ab7349; RRID: AB_305869
|
Phalloidin-Tetramethylrhodamine B isothiocyanate (TRITC) |
Sigma-Aldrich |
Cat: P1951; RRID: AB_231514
|
Rabbit anti-Protein Gene Protein 9.5 (PGP 9.5) |
Zytomed |
Cat# 516-3340 |
Amersham ECL Mouse IgG, HRP-linked whole antibody (from sheep) |
GE Healthcare Life Sciences |
Cat# NA931V; RRID: AB_772210
|
Amersham ECL Rabbit IgG, HRP-linked whole antibody (from donkey) |
GE Healthcare Life Sciences |
Cat# NA934V; RRID: AB_772206
|
Donkey anti-rabbit IgG Alexa 488 |
Thermo Fisher Scientific |
Cat# A-21206; RRID: AB_2535792
|
Donkey anti-rabbit IgG Cy3 |
Jackson ImmunoResearch Labs |
Cat# 711-166-152; RRID: AB_2313568
|
Donkey anti-mouse IgG Alexa 488 |
Thermo Fisher Scientific |
Cat# A-21202; RRID: AB_141607
|
Goat anti-chicken Alexa 488 |
Thermo Fisher Scientific |
Cat# A-11039; RRID: AB_2534096
|
Donkey anti-rabbit IgG Alexa 546 |
Thermo Fisher Scientific |
Cat# A10040; RRID: AB_2534016
|
Goat anti-rabbit IgG Alexa 488 |
Thermo Fisher Scientific |
Cat# A-11008; RRID: AB_143165
|
Guinea pig anti-CASPR |
Gift from Bhat MA |
N/A |
Mouse anti-S100 |
Sigma-Aldrich |
Cat#S2532; RRID: AB_477499
|
Goat anti-Rat CF405M |
Sigma-Aldrich |
Cat#SAB4600463 |
Biotinylated Goat anti-rabbit |
Vector Biolabs |
Cat# BA-1000; RRID: AB_2313606
|
Alexa Fluor 488 streptavidin |
Thermo Fisher Scientific |
Cat#S11223; RRID: AB_2336881
|
|
Bacterial and Virus Strains |
|
Lentivirus CAMKII-EGFP |
Signagen |
Cat#: SL100304 |
|
Chemicals, Peptides, and Recombinant Proteins |
|
BDNF recombinant human |
Thermo Fisher Scientific |
Cat#10908010 |
NT3 recombinant human |
Peprotech |
Cat#450-03 |
β-NGF recombinant human |
Peprotech |
Cat#450-01 |
GDNF recombinant human |
Peprotech |
Cat#450-10 |
Cultrex Mouse Laminin I, Pathclear |
R&D Systems |
Cat#3401-010-02 |
CHIR99021 |
Sigma-Aldrich |
Cat#SML1046 |
SU-5402 |
Sigma-Aldrich |
Cat#SML044 |
DAPT |
Sigma-Aldrich |
Cat#D5942 |
LDN-193189 |
Sigma-Aldrich |
Cat#SML0559 |
SB431542 |
Sigma-Aldrich |
Cat#616461 |
PF-05089771 |
Sigma-Aldrich |
Cat#PZ0311 |
BIIB074 |
Axon Medchem |
Cat#2548 |
Naloxone |
Sigma-Aldrich |
Cat#N7758 |
|
Critical Commercial Assays |
|
Pierce BCA Protein Assay Kit |
Thermo Fisher Scientific |
Cat#: 23227 |
|
Deposited Data |
|
Human iPSC (AD2, AD3, NHDF, AH017) and iPSC-nociceptor RNA-seq data |
Baskozos et al., 2019 |
GEO: GSE107181
|
Human DRG L2 RNA-seq data |
Ray et al., 2018 |
dbGAP: phs001158.v1.p1 |
Single cell RNA-seq human iPSC and iPSC-nociceptor data |
Schwartzentruber et al., 2018 |
ENA: ERP020576 |
Human whole blood, skin, skeletal muscle, fibroblasts, and tibial nerve raw counts |
GTEx V7 |
N/A |
|
Experimental Models: Cell Lines |
|
Human iPSC line_ HC1 |
StemBANCC Consortium |
AD2-1 |
Human iPSC line_ HC2 |
StemBANCC Consortium |
NHDF-1 |
Human iPSC line_HC3 |
StemBANCC Consortium |
AH017-7 |
Human iPSC line_CIP1.1 |
StemBANCC Consortium |
811-05-01 |
Human iPSC line_CIP1.2 |
StemBANCC Consortium |
811-05-03 |
Human iPSC line_CIP2 |
StemBANCC Consortium |
246-03-01 |
|
Oligonucleotides |
|
YWHAZ F 5′-CCTGCATGAAGTCTGTAACTGAG-3′ |
IDT |
N/A |
YWHAZ R 5′-GACCTACGGGCTCCTACAACA-3′ |
IDT |
N/A |
SCN9A F 5′-GGCATAGGCGAGCACATGAA-3′ |
IDT |
N/A |
SCN9A R 5′-AACAAGGAGCCACGAATGCT-3′ |
IDT |
N/A |
|
Recombinant DNA |
|
pSpCas9(BB)-2A-Puro (PX459) V2.0 |
Addgene (Depositor:Feng Zhang) |
#62988 |
|
Software and Algorithms |
|
ImageJ/Fiji |
NIH |
https://imagej.nih.gov/ij/index.html, https://fiji.sc/
|
Clampfit 10 |
Molecular Devices |
http://mdc.custhelp.com/app/answers/detail/a_id/18779/?/axon%E2%84%A2-pclamp%E2%84%A2-10-electrophysiology-data-acquisition-%26-analysis-software |
Prism 7.0 |
GraphPad software |
https://www.graphpad.com/ |
FMRIB’s Software Library |
Smith et al., 2004 |
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki |
QTRAC software |
Institute of Neurology, London, UK |
N/A |
STAR version 2.5.2b |
Dobin et al., 2013 |
https://github.com/alexdobin/STAR |
HTSeq version 0.11.0 |
Anders et al., 2015 |
https://github.com/simon-anders/htseq |
DESeq2 version 1.18.1 |
Love et al., 2014 |
https://www.bioconductor.org/packages/release/bioc/html/DESeq2.html |
GTEx portal version 7 |
Carithers and Moore, 2015 |
https://gtexportal.org/home/ |
R version 3.4.4 |
R Development Core Team, 2018 |
https://cran.r-project.org/ |
Ggplot2 version 2.2.1 |
Wickham, 2009 |
https://cran.r-project.org/web/packages/ggplot2/index.html |
IN Cell Developer Toolbox analysis software build 1.9.2 |
GE |
IN Cell Developer Toolbox analysis software build 1.9.2 |