Table 1.

Bacterial strains used in this study, and culture conditions

No.	Species	Registration No.	Medium for culture
1	Acidaminococcus fermentans	YIT 6071T = ATCC 25085T	modified GAM + 1% Glucose broth
2	Acinetobacter baumannii	YIT 12295T = JCM 6841T	Trypticase Soy broth
3	Akkermansia muciniphila	YIT 11774T = ATCC BAA-835T	modified GAM + 1% Glucose broth
4	Anaerococcus hydrogenalis	YIT 12837T = JCM 7635T	modified GAM + 1% Glucose broth
5	Anaerococcus vaginalis	YIT 11698T = DSM 7457T	modified GAM + 1% Glucose broth
6	Anaerostipes caccae	YIT 10168T = DSM 14662T	modified GAM + 1% Glucose broth
7	Anaerostipes hadrus	YIT 10092T = DSM 3319T	modified GAM + 1% Glucose broth
8	Bacteroides caccae	YIT 10226T = JCM 9498T	modified GAM + 1% Glucose broth
9	Bacteroides dorei	YIT 12192	modified GAM + 1% Glucose broth
10	Bacteroides eggerthii	YIT 10227T = DSM 20697T	modified GAM + 1% Glucose broth
11	Bacteroides fragilis	YIT 6158T = ATCC 25285T	modified GAM + 1% Glucose broth
12	Bacteroides ovatus	YIT 6161T = ATCC 8483T	modified GAM + 1% Glucose broth
13	Bacteroides plebeius	YIT 12661	modified GAM + 1% Glucose broth
14	Bacteroides stercoris	ATCC 43183T	modified GAM + 1% Glucose broth
15	Bacteroides thethaiotaomicron	YIT 6163T = JCM 5827T	modified GAM + 1% Glucose broth
16	Bacteroides uniformis	YIT 6164T = JCM 5828T	modified GAM + 1% Glucose broth
17	Bacteroides vulgatus	YIT 6159T = ATCC 8482T	modified GAM + 1% Glucose broth
18	Bifidobacterium adolescentis	YIT 4011T = ATCC 15703T	modified PYG broth
19	Bifidobacterium animalis subsp. lactis	YIT 4121T = DSM 10140T	modified PYG broth
20	Bifidobacterium angulatum	YIT 4012T = ATCC 27535T	modified PYG broth
21	Bifidobacterium bifidum	YIT 4039T = DSM 20456T	modified PYG broth
22	Bifidobacterium breve	YIT 4014T = ATCC 15700T	modified PYG broth
23	Bifidobacterium catenulatum	YIT 4016T = ATCC 27539T	modified PYG broth
24	Bifidobacterium longumsubsp. infantis	YIT 4018T = ATCC 15697T	modified PYG broth
25	Bifidobacterium longum subsp. longum	YIT 4021T = ATCC 15707T	modified PYG broth
26	Bifidobacterium pseudocatenulatum	YIT 4072T = JCM 1200T	modified PYG broth
27	Blautia coccoides	YIT 6035T = JCM 1395T	modified GAM + 1% Glucose broth
28	Blautia hansenii	YIT 12129T = DSM 20583T	modified GAM + 1% Glucose broth
29	Blautia hydrogenotrophica	YIT 10080T = DSM 10507T	modified GAM + 1% Glucose broth
30	Blautia producta	YIT 6141T = JCM 1471T	modified GAM + 1% Glucose broth
31	Blautia schinkii	YIT 6177T = DSM 10518T	modified GAM + 1% Glucose broth
32	Butyrivibrio crossotus	YIT 10152T = DSM 2876T	modified GAM + 1% Glucose broth
33	Citrobacter freundii	YIT 6045T = JCM 1657T	Trypticase Soy broth
34	Citrobacter koseri	YIT 10117T = JCM 1658T	Trypticase Soy broth
35	Clostridium aminophilum	YIT 6167T = DSM 10710T	modified GAM + 1% Glucose broth
36	Clostridium aminovalericum	YIT 10174T = JCM 11016T	modified GAM + 1% Glucose broth
37	Clostridium asparagiforme	YIT 12840T = DSM 15981T	modified GAM + 1% Glucose broth
38	Clostridium bifermentans	YIT 6053T = JCM 1386T	modified GAM + 1% Glucose broth
39	Clostridium butyricum	YIT 10073T = JCM 1391T	modified GAM + 1% Glucose broth
40	Clostridium celerecrescens	YIT 6168T = DSM 5628T	modified GAM + 1% Glucose broth
41	Clostridium clostridioforme	YIT 6051T = JCM 1291T	modified GAM + 1% Glucose broth
42	Clostridium cochlearium	YIT 12837T = JCM 1396T	modified GAM + 1% Glucose broth
43	Clostridium cocleatum	YIT 6036T = JCM 1397T	modified GAM + 1% Glucose broth
44	Clostridium difficile	YIT 10084T = JCM 1296T	modified GAM + 1% Glucose broth
45	Clostridium ghonii	YIT 11479T = JCM 1400T	modified GAM + 1% Glucose broth
46	Clostridium glycolicum	YIT 6058T = JCM 1401T	modified GAM + 1% Glucose broth
47	Clostridium hathewayi	YIT 12259T = DSM 13479T	modified PYG broth
48	Clostridium hylemonae	YIT 12258T = DSM 15053T	modified PYG broth
49	Clostridium indolis	YIT 10077T = JCM 1380T	modified GAM +1% Glucose broth
50	Clostridium innocuum	YIT 10151T = DSM 1286T	modified GAM + 1% Glucose broth
51	Clostridium leptum	YIT 6169T = DSM 753T	modified GAM + 1% Glucose broth
52	Clostridium limosum	YIT 6061T = JCM 1427T	modified GAM + 1% Glucose broth
53	Clostridium malenominatum	YIT 12839T = JCM 1405T	modified GAM + 1% Glucose broth
54	Clostridium nexile	YIT 6170T = ATCC 27757T	modified GAM + 1% Glucose broth
55	Clostridium orbiscindens	YIT 10060T = DSM 6740T	modified GAM + 1% Glucose broth
56	Clostridium oroticum	YIT 6037T = JCM 1429T	modified GAM + 1% Glucose broth
57	Clostridium paraputrificum	YIT 10074T = JCM 1293T	modified GAM + 1% Glucose broth
58	Clostridium perfringens	YIT 6050T = JCM 1290T	modified GAM + 1% Glucose broth
59	Clostridium ramosum	YIT 10062T = JCM 1298T	modified GAM + 1% Glucose broth
60	Clostridium saccharolyticum	YIT 12747T = DSM 2544T	modified GAM + 1% Glucose broth
61	Clostridium scindens	YIT 6171T = JCM 6567T	modified GAM + 1% Glucose broth
62	Clostridium sordellii	YIT 6065T = JCM 3814T	modified GAM + 1% Glucose broth
63	Clostridium sphenoides	YIT 6059T = JCM 1415T	modified GAM + 1% Glucose broth
64	Clostridium spiroforme	YIT 10342T = JCM 1432T	modified GAM + 1% Glucose broth
65	Clostridium sporogenes	YIT 6060T = JCM 1416T	modified GAM + 1% Glucose broth
66	Clostridium symbiosum	YIT 11480T = JCM 1297T	modified GAM + 1% Glucose broth
67	Clostridium tetanomorphum	YIT 12841T = DSM 4474T	modified GAM + 1% Glucose broth
68	Clostridium xylanovorans	YIT 12130T = DSM 12503T	modified PYG broth
69	Collinsella aerofaciens	YIT 10235T = DSM 3979T	modified GAM + 1% Glucose broth
70	Coprococcus eutactus	YIT 10160T = ATCC 27759T	modified GAM + 1% Glucose broth
71	Cronobacter sakazakii	YIT 10246T = JCM 1233T	Trypticase Soy broth
72	Dorea formicigenerans	YIT 10093T = DSM 3992T	modified GAM + 1% Glucose broth
73	Edwardsiella tarda	YIT 10118T = JCM 1656T	Trypticase Soy broth
74	Eggerthella lenta	YIT 6077T = ATCC 25559T	modified GAM + 1% Glucose broth
75	Enterobacter aerogenes	YIT 6042T = JCM 1235T	Trypticase Soy broth
76	Enterobacter cloacae	YIT 6041T = JCM 1232T	Trypticase Soy broth
77	Enterococcus avium	YIT 10255T = JCM 8722T	MRS broth
78	Enterococcus durans	YIT 2036T = GIFU 9960T	MRS broth
79	Enterococcus faecalis	YIT 2031T = ATCC 19433T	MRS broth
80	Enterococcus faecium	YIT 2032T = ATCC 19434T	MRS broth
81	Enterococcus gilvus	YIT 11114T = DSM 15689T	MRS broth
82	Enterococcus hirae	YIT 2004T = ATCC 8043T	MRS broth
83	Enterococcus malodoratus	YIT 11175T = JCM 8730T	MRS broth
84	Enterococcus mundtii	YIT 11176T = JCM 8731T	MRS broth
85	Enterococcus pseudoavium	YIT 11177T = JCM 8732T	MRS broth
86	Enterococcus raffinosus	YIT 11178T = JCM 8733T	MRS broth
87	Escherichia coli	YIT 6044T = JCM 1649T	Trypticase Soy broth
88	Eubacterium biforme	YIT 6076T = ATCC 27806T	modified GAM + 1% Glucose broth
89	Eubacterium cellulosolvens	YIT 12261T = ATCC 43171T	modified GAM + 1% Glucose broth
90	Eubacterium cylindroides	YIT 10236T = DSM 3983T	modified GAM + 1% Glucose broth
91	Eubacterium dolichum	YIT 10081T = DSM 3991T	modified GAM + 1% Glucose broth
92	Eubacterium eligens	YIT 10078T = DSM 3376T	modified GAM + 1% Glucose broth
93	Eubacterium hallii	YIT 10064T = DSM 3353T	modified GAM + 1% Glucose broth
94	Eubacterium rectale	YIT 6082T = ATCC 33656T	modified GAM + 1% Glucose broth
95	Eubacterium siraeum	YIT 10049T = DSM 3996T	modified GAM + 1% Glucose broth
96	Eubacterium uniforme	YIT 12318T = ATCC 35992T	modified GAM + 1% Glucose broth
97	Eubacterium ventriosum	YIT 10066T = ATCC 27560T	modified GAM + 1% Glucose broth
98	Faecalibacterium prausnitzii	YIT 10067T = ATCC 27768T	modified PYG broth
99	Fusobacterium necrogenes	YIT 10362T = ATCC 25556T	modified GAM + 1% Glucose broth
100	Fusobacterium necrophorum subsp. necrophorum	YIT 10343T = JCM 3718T	modified GAM + 1% Glucose broth
101	Fusobacterium nucleatum subsp. nucleatum	YIT 6069T = JCM 8532T	modified GAM + 1% Glucose broth
102	Fusobacterium russii	YIT 10363T = ATCC 25533T	modified GAM + 1% Glucose broth
103	Fusobacterium varium	YIT 11855 = JCM 3722	modified GAM + 1% Glucose broth
104	Hafnia alvei	YIT 10121T = JCM 1666T	Trypticase Soy broth
105	Holdemania filiformis	YIT 12717	modified GAM + 1% Glucose broth
106	Klebsiella oxytoca	YIT 10122T = JCM 1665T	Trypticase Soy broth
107	Klebsiella pneumoniae	YIT 6046T = JCM 1662T	Trypticase Soy broth
108	Lactobacillus acidophilus	YIT 0070T = ATCC 4356T	MRS broth
109	Lactobacillus brevis	YIT 0076T = ATCC 14869T	MRS broth
110	Lactobacillus casei	YIT 0180T = ATCC 334T	MRS broth
111	Lactobacillus fermentum	YIT 0081T = ATCC 14931T	MRS broth
112	Lactobacillus fructivorans	YIT 0235T = JCM 1117T	MRS broth
113	Lactobacillus gasseri	YIT 0192T = DSM 20243T	MRS broth
114	Lactobacillus plantarum	YIT 0102T = ATCC 14917T	MRS broth
115	Lactobacillus reuteri	YIT 0197T = JCM 1112T	MRS broth
116	Lactobacillus ruminis	YIT 0221T = JCM 1152T	MRS broth
117	Lactobacillus sakei subsp. sakei	YIT 0247T = JCM 1157T	MRS broth
118	Lactococcus garvieae	YIT 2071T = NCFB 2155T	MRS broth
119	Lactococcus lactis subsp. lactis	YIT 2008T = ATCC 19435T	MRS broth
120	Lactococcus plantarum	YIT 2061T = ATCC 43199T	MRS broth
121	Lactococcus raffinolactis	YIT 2062T = ATCC 43920T	MRS broth
122	Megasphaera elsdenii	YIT 6063T = JCM 1772T	modified GAM + 1%Glucose broth
123	Morganella morganii	YIT 10124T = JCM 1672T	Trypticase Soy broth
124	Olsenella uli	YIT 12014T = JCM 12494T	modified GAM + 1%Glucose broth
125	Parabacteroides distasonis	YIT 6162T = JCM 5825T	modified GAM + 1%Glucose broth
126	Parabacteroides johnsonii	YIT 12680	modified GAM + 1%Glucose broth
127	Parabacteroides merdae	ATCC 43184T	modified GAM + 1%Glucose broth
128	Peptoniphilus asaccharolyticus	YIT 10026T = GIFU 7656T	modified GAM + 1%Glucose broth
129	Porphyromonas gingivalis	YIT 12766T = JCM 12257T	modified GAM + 1%Glucose broth
130	Prevotella denticola	YIT 6131 = JCM 8528	modified GAM + 1%Glucose broth
131	Prevotella intermedia	YIT 12886T = JCM 11150T	modified GAM + 1%Glucose broth
132	Prevotella melaninogenica	YIT 6039T = ATCC 25845T	modified GAM + 1%Glucose broth
133	Prevotella oris	YIT 6134T = JCM 8540T	modified GAM + 1%Glucose broth
134	Proteus mirabilis	YIT 6047T = JCM 1669T	Trypticase Soy broth
135	Proteus penneri	YIT 10252T = JCM 3948T	Trypticase Soy broth
136	Proteus vulgaris	YIT 10335T = DSM 13387T	Trypticase Soy broth
137	Providencia alcalifaciens	YIT 10128T = JCM 1673T	Trypticase Soy broth
138	Providencia rettgerii	YIT 10108T = DSM 4542T	Trypticase Soy broth
139	Pseudomonas aeruginosa	YIT 6108T = IFO 12689T	Trypticase Soy broth
140	Romboutsia lituseburensis	YIT 10059T = JCM 1404T	modified GAM + 1% Glucose broth
141	Roseburia faecis	YIT 11921T = DSM 16840T	modified GAM + 1% Glucose broth
142	Roseburia hominis	YIT 11920T = DSM 16839T	modified GAM + 1% Glucose broth
143	Roseburia intestinalis	YIT 10172T = DSM 14610T	modified GAM + 1% Glucose broth
144	Ruminococcus bromii	YIT 6078T = ATCC 27255T	modified GAM + 1% Glucose broth
145	Ruminococcus gnavus	YIT 6176T = ATCC 29149T	modified GAM + 1% Glucose broth
146	Ruminococcus lactaris	YIT 10225T = ATCC 29176T	modified GAM + 1% Glucose broth
147	Ruminococcus obeum	YIT 6085T = ATCC 29174T	modified GAM + 1% Glucose broth
148	Ruminococcus torques	YIT 10159T = ATCC 27756T	modified GAM + 1% Glucose broth
149	Staphylococcus epidermidis	YIT 6049T = ATCC 14990T	Trypticase Soy broth
150	Streptococcus mitis	YIT 2069T = GIFU 12458T	MRS broth
151	Streptococcus salivarius	YIT 10260T = JCM 5707T	MRS broth
152	Streptococcus thermophilus	YIT 2037T = ATCC 19258T	MRS broth
153	Veillonella parvula	YIT 6072T = GIFU 7884T	modified GAM + 1% Glucose broth