Table 1.
Fungal and yeast strain genomes in AYbRAH. Protein sequences were downloaded from UniProt or MycoCosm. Species were assigned to monophyletic or paraphyletic groups based on divergence time with S. cerevisiae
| Species | Strain | Group | Database | Reference |
|---|---|---|---|---|
| Rhodotorula graminis | WP1 | Saccharomycotina outgroup | MycoCosm | (73) |
| Saitoella complicata | NRRL Y-17804 | MycoCosm | (28) | |
| Schizosaccharomyces pombe | 972h- | UniProt | (74) | |
| Aspergillus niger | CBS 513.88 | UniProt | (75) | |
| Neurospora crassa | CBS708.71 | UniProt | (76) | |
| Trichoderma reesei | QM6a | UniProt | (77) | |
| Lipomyces starkeyi | NRRL Y-11557 | basal Saccharomycotina | MycoCosm | (28) |
| Yarrowia lipolytica | CLIB 122 | UniProt | (78) | |
| Blastobotrys adeninivorans | LS3 | MycoCosm | (79) | |
| Nadsonia fulvescens var. elongata | DSM 6959 | MycoCosm | (28) | |
| Ascoidea rubescens | NRRL Y17699 | MycoCosm | (28) | |
| Pachysolen tannophilus | NRRL Y-2460 | Pichiaceae | MycoCosm | (28) |
| Komagataella phaffii | GS115 | UniProt | (80) | |
| Kuraishia capsulata | CBS 1993 | UniProt | (81) | |
| Ogataea arabinofermentans | NRRL YB-2248 | MycoCosm | (28) | |
| Ogataea parapolymorpha | NRRL Y-7560 | UniProt | (83) | |
| Dekkera bruxellensis | CBS 2499 | MycoCosm | (82) | |
| Pichia membranifaciens | NRRL Y-2026 | MycoCosm | (28) | |
| Pichia kudriavzevii | SD108 | UniProt | (84) | |
| Babjeviella inositovora | NRRL Y-12698 | CTG clade | MycoCosm | (28) |
| Metschnikowia bicuspidata | NRRL YB-4993 | MycoCosm | (28) | |
| Meyerozyma guilliermondii | CBS 566 | UniProt | (85) | |
| Debaryomyces hansenii | CBS 767 | UniProt | (78) | |
| Scheffersomyces stipitis | CBS 6054 | UniProt | (86) | |
| Spathaspora passalidarum | NRRL Y-27907 | UniProt | (30) | |
| Wickerhamomyces anomalus | NRRL Y-366-8 | Phaffomycetaceae & Saccharomycodaceae | MycoCosm | (28) |
| Cyberlindnera jadinii | NRRL Y-1542 | MycoCosm | (28) | |
| Hanseniaspora valbyensis | NRRL Y-1626 | MycoCosm | (28) | |
| Kluyveromyces lactis | CBS 2359 | Saccharomycetaceae | UniProt | (78) |
| Lachancea thermotolerans | CBS 6340 | UniProt | (87) | |
| Zygosaccharomyces rouxii | CBS 732 | UniProt | (87) | |
| Saccharomyces cerevisiae | S288C | UniProt | (88) | |
| Vanderwaltozyma polyspora | DSM 70294 | UniProt | (89) |