Table 5. Runtime and maximum RAM usage for the Drosophila and human simulated datasets, running on a hyper-threaded quad-core 15” 2015 Macbook Pro with SSD and 16GB RAM.
Measured via the peakRAM package 36. For the bootstrapped runs, 100 iterations were used for the quantification reproducibility and 9 for the cross-replicate reproducibility, representing all the pairwise combinations of the 3 replicates per condition.
| Dataset | # of
Bootstraps |
# of
Threads |
Wallclock Time
(hh:mm:ss) |
Max RAM
(GB) |
|---|---|---|---|---|
| Drosophila | 0 | 1 | 00:00:16 | 0.36 |
| 8 | 00:00:08 | 0.86 | ||
| 100 + 9 | 1 | 00:20:20 | 1.01 | |
| 8 | 00:07:56 | 0.87 | ||
| Human | 0 | 1 | 00:01:39 | 3.05 |
| 8 | 00:00:47 | 3.21 | ||
| 100 + 9 | 1 | 02:11:13 | 4.25 | |
| 8 | 00:47:47 | 4.15 |