Table 4.
Chromosome | Gene name | Genotype | Non-exposed |
Exposed |
||||
---|---|---|---|---|---|---|---|---|
Cases | Controls | OR* (95% CI) | Cases | Controls | OR* (95% CI) | |||
3 | TOPBP1_06 | rs17301766 | ||||||
CC | 21 | 40 | 1.00 | 269 | 260 | 1.96 (1.06–3.66) | ||
TC or TT | 15 | 12 | 1.00 | 134 | 152 | 0.81 (0.33–1.98) | ||
P for interaction | 0.028 | |||||||
3 | TOPBP1_09 | rs11706586 | ||||||
CC | 20 | 40 | 1.00 | 267 | 262 | 2.06 (1.10–3.86) | ||
TC or TT | 15 | 12 | 1.00 | 135 | 151 | 0.85 (0.35–2.08) | ||
P for interaction | 0.025 | |||||||
3 | TOPBP1_10 | rs7349558 | ||||||
AA | 22 | 40 | 1.00 | 270 | 257 | 1.94 (1.05–3.59) | ||
AC or CC | 14 | 12 | 1.00 | 133 | 156 | 0.79 (0.32–1.95) | ||
P for interaction | 0.039 | |||||||
7 | RPA3_01 | rs4720751 | ||||||
TT | 20 | 24 | 1.00 | 175 | 217 | 0.85 (0.43–1.71) | ||
TC or CC | 15 | 28 | 1.00 | 227 | 196 | 2.91 (1.39–6.09) | ||
P for interaction | 0.034 | |||||||
7 | RPA3_02 | rs17136898 | ||||||
AA | 22 | 41 | 1.00 | 301 | 292 | 2.11 (1.15–3.88) | ||
AG or GG | 13 | 11 | 1.00 | 101 | 121 | 0.78 (0.29–2.07) | ||
P for interaction | 0.050 | |||||||
7 | XRCC2_01 | rs10234749 | ||||||
CC | 19 | 36 | 1.00 | 279 | 251 | 2.51 (1.32–4.75) | ||
AC or AA | 16 | 16 | 1.00 | 122 | 162 | 0.59 (0.25–1.44) | ||
P for interaction | 0.025 | |||||||
10 | MGMT_02 | rs1762444 | ||||||
GG | 8 | 25 | 1.00 | 158 | 161 | 3.36 (1.37–8.27) | ||
AG or AA | 27 | 27 | 1.00 | 244 | 252 | 0.98 (0.52–1.85) | ||
P for interaction | 0.024 | |||||||
10 | MGMT_32 | rs12219606 | ||||||
CC | 8 | 21 | 1.00 | 139 | 143 | 2.55 (0.98–6.65) | ||
AC or AA | 27 | 31 | 1.00 | 265 | 270 | 1.19 (0.65–2.16) | ||
P for interaction | 0.049 | |||||||
10 | MGMT_36 | rs4750763 | ||||||
AA | 7 | 26 | 1.00 | 165 | 171 | 3.79 (1.44–9.98) | ||
AC or CC | 28 | 26 | 1.00 | 237 | 242 | 0.99 (0.54–1.85) | ||
P for interaction | 0.015 | |||||||
11 | ALKBH3_03 | rs11037690 | ||||||
GG | 14 | 32 | 1.00 | 203 | 193 | 2.43 (1.15–5.14) | ||
AG or AA | 21 | 20 | 1.00 | 198 | 220 | 0.99 (0.48–2.02) | ||
P for interaction | 0.029 | |||||||
11 | ALKBH3_14 | rs10768994 | ||||||
TT | 8 | 26 | 1.00 | 137 | 131 | 2.88 (1.13–7.29) | ||
TC or CC | 28 | 26 | 1.00 | 267 | 282 | 0.99 (0.53–1.84) | ||
P for interaction | 0.0086 | |||||||
11 | ALKBH3_15 | rs10768995 | ||||||
GG | 21 | 19 | 1.00 | 146 | 158 | 0.97 (0.45–2.09) | ||
GC or CC | 14 | 33 | 1.00 | 256 | 255 | 2.37 (1.16–4.86) | ||
P for interaction | 0.012 | |||||||
11 | ALKBH3_19 | rs868784 | ||||||
CC | 11 | 29 | 1.00 | 169 | 155 | 2.66 (1.16–6.12) | ||
TC or TT | 24 | 23 | 1.00 | 233 | 258 | 1.06 (0.54–2.05) | ||
P for interaction | 0.018 | |||||||
11 | ALKBH3_20 | rs3893853 | ||||||
CC | 20 | 38 | 1.00 | 275 | 247 | 2.01 (1.06–3.82) | ||
TC or TT | 16 | 14 | 1.00 | 128 | 166 | 0.85 (0.36–1.98) | ||
P for interaction | 0.014 | |||||||
11 | ALKBH3_21 | rs4755217 | ||||||
TT | 8 | 26 | 1.00 | 137 | 133 | 2.86 (1.13–7.24) | ||
TC or CC | 27 | 25 | 1.00 | 259 | 275 | 1.03 (0.55–1.95) | ||
P for interaction | 0.014 | |||||||
11 | ALKBH3_22 | rs1973717 | ||||||
CC | 20 | 20 | 1.00 | 155 | 165 | 1.10 (0.52–2.34) | ||
TC or TT | 15 | 32 | 1.00 | 245 | 247 | 2.09 (1.03–4.26) | ||
P for interaction | 0.045 | |||||||
13 | PARP4_04 | rs4770687 | ||||||
GG | 14 | 13 | 1.00 | 99 | 121 | 0.62 (0.23–1.65) | ||
AG or AA | 22 | 39 | 1.00 | 303 | 291 | 2.28 (1.24–4.19) | ||
P for interaction | 0.043 | |||||||
19 | LIG1_01 | rs251693 | ||||||
TT | 16 | 18 | 1.00 | 112 | 138 | 0.71 (0.32–1.61) | ||
TC or CC | 19 | 34 | 1.00 | 291 | 275 | 2.51 (1.30–4.83) | ||
P for interaction | 0.024 | |||||||
19 | LIG1_02 | rs2288878 | ||||||
GG | 16 | 18 | 1.00 | 108 | 137 | 0.72 (0.32–1.61) | ||
AG or AA | 20 | 34 | 1.00 | 294 | 276 | 2.36 (1.23–4.50) | ||
P for interaction | 0.024 | |||||||
19 | LIG1_03 | rs274897 | ||||||
CC | 16 | 18 | 1.00 | 109 | 138 | 0.69 (0.30–1.55) | ||
GC or GG | 19 | 34 | 1.00 | 293 | 274 | 2.55 (1.32–4.91) | ||
P for interaction | 0.020 | |||||||
19 | LIG1_04 | rs2386523 | ||||||
CC | 14 | 15 | 1.00 | 86 | 103 | 0.73 (0.30–1.80) | ||
TC or TT | 21 | 37 | 1.00 | 317 | 309 | 2.34 (1.25–4.38) | ||
P for interaction | 0.025 | |||||||
19 | LIG1_05 | rs2163619 | ||||||
GG | 13 | 13 | 1.00 | 73 | 95 | 0.57 (0.22–1.50) | ||
AG or AA | 22 | 39 | 1.00 | 330 | 316 | 2.40 (1.30–4.42) | ||
P for interaction | 0.0060 | |||||||
19 | LIG1_07 | rs274873 | ||||||
AA | 14 | 16 | 1.00 | 95 | 111 | 0.59 (0.24–1.46) | ||
AG or GG | 22 | 36 | 1.00 | 308 | 302 | 2.24 (1.21–4.15) | ||
P for interaction | 0.035 | |||||||
19 | LIG1_10 | rs10421339 | ||||||
GG | 15 | 15 | 1.00 | 94 | 113 | 0.45 (0.18–1.16) | ||
GC or CC | 20 | 37 | 1.00 | 308 | 300 | 2.50 (1.34–4.69) | ||
P for interaction | 0.0081 | |||||||
X | UBE2A_01 | rs5910616 | ||||||
GG | 33 | 43 | 1.00 | 309 | 328 | 1.28 (0.75–2.19) | ||
AG or GG | 2 | 9 | 1.00 | 91 | 85 | 6.82 (1.08–43.08) | ||
P for interaction | 0.043 |
Adjusted for age (continuous), gender, race, and BMI.
OR: Odds Ratio; CI: Confidence Interval