Table 5.
Chromosome | Gene name | Genotype | Non-exposed |
Exposed |
||||
---|---|---|---|---|---|---|---|---|
Cases | Controls | OR* (95% CI) | Cases | Controls | OR* (95% CI) | |||
3 | TOPBP1_06 | rs17301766 | ||||||
CC | 21 | 40 | 1.00 | 221 | 260 | 1.62 (0.86–3.06) | ||
TC or TT | 14 | 12 | 1.00 | 116 | 152 | 0.79 (0.32–1.96) | ||
P for interaction | 0.044 | |||||||
3 | TOPBP1_09 | rs11706586 | ||||||
CC | 20 | 40 | 1.00 | 221 | 262 | 1.73 (0.91–3.27) | ||
TC or TT | 14 | 12 | 1.00 | 115 | 151 | 0.81 (0.33–2.01) | ||
P for interaction | 0.035 | |||||||
7 | RPA3_01 | rs4720751 | ||||||
TT | 19 | 24 | 1.00 | 141 | 217 | 0.69 (0.33–1.41) | ||
TC or CC | 15 | 28 | 1.00 | 196 | 196 | 2.73 (1.29–5.75) | ||
P for interaction | 0.024 | |||||||
7 | HUS1_03 | rs3176595 | ||||||
GG | 31 | 36 | 1.00 | 261 | 328 | 1.03 (0.59–1.82) | ||
AG or AA | 4 | 16 | 1.00 | 74 | 84 | 4.20 (1.09–16.23) | ||
P for interaction | 0.033 | |||||||
7 | XRCC2_01 | rs10234749 | ||||||
CC | 18 | 36 | 1.00 | 231 | 251 | 2.24 (1.16–4.32) | ||
AC or AA | 16 | 16 | 1.00 | 104 | 162 | 0.50 (0.20–1.24) | ||
P for interaction | 0.026 | |||||||
10 | MGMT_02 | rs1762444 | ||||||
GG | 8 | 25 | 1.00 | 131 | 161 | 2.86 (1.15–7.11) | ||
AG or AA | 26 | 27 | 1.00 | 205 | 252 | 0.84 (0.44–1.62) | ||
P for interaction | 0.025 | |||||||
10 | MGMT_36 | rs4750763 | ||||||
AA | 7 | 26 | 1.00 | 137 | 171 | 3.49 (1.30–9.39) | ||
AC or CC | 27 | 26 | 1.00 | 199 | 242 | 0.85 (0.45–1.59) | ||
P for interaction | 0.016 | |||||||
11 | ALKBH3_03 | rs11037690 | ||||||
GG | 13 | 32 | 1.00 | 171 | 193 | 2.16 (0.99–4.72) | ||
AG or AA | 21 | 20 | 1.00 | 164 | 220 | 0.88 (0.43–1.81) | ||
P for interaction | 0.026 | |||||||
11 | ALKBH3_14 | rs10768994 | ||||||
TT | 8 | 26 | 1.00 | 115 | 131 | 2.40 (0.93–6.17) | ||
TC or CC | 27 | 26 | 1.00 | 223 | 282 | 0.87 (0.46–1.63) | ||
P for interaction | 0.010 | |||||||
11 | ALKBH3_15 | rs10768995 | ||||||
GG | 21 | 19 | 1.00 | 124 | 158 | 0.83 (0.38–1.80) | ||
GC or CC | 13 | 33 | 1.00 | 212 | 255 | 2.21 (1.05–4.64) | ||
P for interaction | 0.011 | |||||||
11 | ALKBH3_19 | rs868784 | ||||||
CC | 10 | 29 | 1.00 | 144 | 155 | 2.40 (1.01–5.72) | ||
TC or TT | 24 | 23 | 1.00 | 193 | 258 | 0.92 (0.47–1.80) | ||
P for interaction | 0.014 | |||||||
11 | ALKBH3_20 | rs3893853 | ||||||
CC | 19 | 38 | 1.00 | 231 | 247 | 1.72 (0.89–3.34) | ||
TC or TT | 16 | 14 | 1.00 | 106 | 166 | 0.74 (0.31–1.74) | ||
P for interaction | 0.013 | |||||||
11 | ALKBH3_21 | rs4755217 | ||||||
TT | 8 | 26 | 1.00 | 116 | 133 | 2.47 (0.96–6.32) | ||
TC or CC | 26 | 25 | 1.00 | 214 | 275 | 0.90 (0.47–1.72) | ||
P for interaction | 0.015 | |||||||
11 | ALKBH3_22 | rs1973717 | ||||||
CC | 20 | 20 | 1.00 | 133 | 165 | 0.95 (0.44–2.04) | ||
TC or TT | 14 | 32 | 1.00 | 201 | 247 | 1.89 (0.91–3.96) | ||
P for interaction | 0.048 | |||||||
13 | PARP4_04 | rs4770687 | ||||||
GG | 13 | 13 | 1.00 | 80 | 121 | 0.56 (0.20–1.55) | ||
AG or AA | 22 | 39 | 1.00 | 256 | 291 | 1.92 (1.04–3.54) | ||
P for interaction | 0.042 | |||||||
19 | LIG1_01 | rs251693 | ||||||
TT | 16 | 18 | 1.00 | 93 | 138 | 0.55 (0.24–1.28) | ||
TC or CC | 18 | 34 | 1.00 | 244 | 275 | 2.33 (1.19–4.56) | ||
P for interaction | 0.019 | |||||||
19 | LIG1_02 | rs2288878 | ||||||
GG | 16 | 18 | 1.00 | 90 | 137 | 0.55 (0.24–1.28) | ||
AG or AA | 19 | 34 | 1.00 | 246 | 276 | 2.20 (1.13–4.27) | ||
P for interaction | 0.020 | |||||||
19 | LIG1_03 | rs274897 | ||||||
CC | 16 | 18 | 1.00 | 90 | 138 | 0.52 (0.22–1.21) | ||
GC or GG | 18 | 34 | 1.00 | 246 | 274 | 2.38 (1.22–4.67) | ||
P for interaction | 0.015 | |||||||
19 | LIG1_04 | rs2386523 | ||||||
CC | 14 | 15 | 1.00 | 72 | 103 | 0.56 (0.22–1.43) | ||
TC or TT | 20 | 37 | 1.00 | 265 | 309 | 2.16 (1.14–4.10) | ||
P for interaction | 0.020 | |||||||
19 | LIG1_05 | rs2163619 | ||||||
GG | 13 | 13 | 1.00 | 61 | 95 | 0.39 (0.14–1.12) | ||
AG or AA | 21 | 39 | 1.00 | 276 | 316 | 2.19 (1.17–4.09) | ||
P for interaction | 0.0044 | |||||||
19 | LIG1_07 | rs274873 | ||||||
AA | 14 | 16 | 1.00 | 79 | 111 | 0.43 (0.16–1.11) | ||
AG or GG | 21 | 36 | 1.00 | 258 | 302 | 2.07 (1.10–3.90) | ||
P for interaction | 0.026 | |||||||
19 | LIG1_10 | rs10421339 | ||||||
GG | 15 | 15 | 1.00 | 79 | 113 | 0.34 (0.12–0.91) | ||
GC or CC | 19 | 37 | 1.00 | 257 | 300 | 2.29 (1.20–4.36) | ||
P for interaction | 0.0066 | |||||||
X | UBE2A_01 | rs5910616 | ||||||
GG | 32 | 43 | 1.00 | 256 | 328 | 1.11 (0.64–1.92) | ||
AG or AA | 2 | 9 | 1.00 | 80 | 85 | 6.35 (1.00–40.40) | ||
P for interaction | 0.034 |
Adjusted for age (continuous), gender, race, and BMI.
OR: Odds Ratio; CI: Confidence Interval