Table 1.
List of the strawberry VQ members and selected properties. Subcellular locations predicted by LOCALIZER are: ch, chloroplast; n, nucleus. Nuclear location signals (NLS) predicted by SeqNLS with scores greater than 0.5 are marked by asterisk. Note that some of the isoforms present identical or similar protein properties.
| Name | Gene id. (F. vesca v2.0.a2) | Genomic location | Splicing forms | Exons | Protein properties | ||||
|---|---|---|---|---|---|---|---|---|---|
| Length (aa) | MW (KDa) | PI | Domains | Subcellular location | |||||
| FvVQ1 | gene05795-v1.0-hybrid | Fvb1:11109731.0.11110700 (+strand) | 1 | 177 | 19.40 | 9.58 | VQ | ch* | |
| FvVQ2 | gene12350-v1.0-hybrid | Fvb1:12947350.0.12948422 (+strand) | 2 | 186 | 20.69 | 9.55 | VQ | ||
| FvVQ3 | gene17872-v1.0-hybrid | Fvb1:14815114.0.14815929 (−strand) | 1 | 271 | 29.32 | 8.10 | VQ | ch/n | |
| FvVQ4 | gene16338-v1.0-hybrid | Fvb1:17333502.0.17343519 (−strand) | 2 | 460 | 49.20 | 6.67 | VQ | n* | |
| FvVQ5 | gene32666-v1.0-hybrid | Fvb2:9213921.0.9216468 (+strand) | 3 | 361 | 39.48 | 6.87 | VQ | n* | |
| FvVQ6 | gene02378-v2.0.a2-hybrid | Fvb3:5205231.0.5207960 (−strand) | t1, t2 | 3 | 254 | 27.71 | 9.76 | VQ | * |
| FvVQ7 | gene19985-v1.0-hybrid | Fvb3:7601133.0.7601903 (+strand) | 1 | 238 | 26.20 | 5.75 | VQ | * | |
| FvVQ8 | gene02352-v2.0.a2-hybrid | Fvb3:8749508.0.8750454 (+strand) | 2 | 148 | 16.35 | 10.14 | VQ | ||
| FvVQ9 | gene17096-v2.0.a2-hybrid | Fvb4:8384711.0.8386867 (+strand) | 1 | 261 | 28.78 | 9.58 | VQ | ||
| FvVQ10 | gene22762-v1.0-hybrid | Fvb4:23658011.0.23658958 (+strand) | 1 | 315 | 33.98 | 10.80 | VQ | ||
| FvVQ11 | gene03724-v1.0-hybrid | Fvb4:27000140.0.27000874 (−strand) | 1 | 244 | 27.19 | 6.82 | VQ | ||
| FvVQ12 | gene25153-v1.0-hybrid | Fvb5:6972449.0.6973138 (−strand) | 1 | 229 | 24.75 | 5.83 | VQ | n* | |
| FvVQ13 | gene26510-v2.0.a2-hybrid | Fvb5:25430959.0.25435652 (+strand) | t5 | 2 | 676 | 77.38 | 7.53 | VQ, LRR8, NB-ARC | |
| t2 | 3 | 676 | 77.39 | 7.54 | |||||
| t4 | 3 | 678 | 77.27 | 6.89 | |||||
| t1,t3 | 4 | 678 | 77.28 | 6.90 | |||||
| FvVQ14 | gene11973-v1.0-hybrid | Fvb5:26904474.0.26905877 (+strand) | 1 | 330 | 35.67 | 10.05 | VQ | * | |
| FvVQ15 | gene22130-v1.0-hybrid | Fvb5:27727944.0.27729224 (−strand) | 1 | 426 | 46.02 | 7.02 | VQ | n* | |
| FvVQ16 | gene16601-v1.0-hybrid | Fvb6:1405916.0.1406311 (+strand) | 1 | 131 | 15.15 | 5.56 | VQ | n** | |
| FvVQ17 | gene00230-v1.0-hybrid | Fvb6:4590905.0.4592326 (+strand) | 1 | 248 | 26.40 | 9.47 | VQ | n* | |
| FvVQ18 | gene21583-v1.0-hybrid | Fvb6:12584223.0.12585325 (+strand) | 1 | 149 | 16.35 | 6.05 | VQ | n* | |
| FvVQ19 | gene18133-v1.0-hybrid | Fvb6:17070375.0.17071259 (+strand) | 1 | 148 | 16.56 | 9.25 | VQ | n* | |
| FvVQ20 | gene22640-v1.0-hybrid | Fvb6:18023651.0.18024721 (−strand) | 1 | 184 | 20.68 | 9.27 | VQ | n* | |
| FvVQ21 | gene15994-v1.0-hybrid | Fvb6:22449818.0.22451424 (+strand) | 1 | 195 | 21.36 | 8.03 | VQ | ||
| FvVQ22 | gene28736-v1.0-hybrid | Fvb6:30523488.0.30524048 (+strand) | 1 | 186 | 20.78 | 4.30 | VQ | n | |
| FvVQ23 | gene28758-v1.0-hybrid | Fvb6:30654008.0.30657346 (−strand) | 3 | 263 | 29.62 | 4.77 | VQ | n * | |
| FvVQ24 | gene24219-v1.0-hybrid | Fvb6:31699569.0.31700294 (+strand) | 1 | 241 | 25.53 | 10.24 | VQ | n* | |
| FvVQ25 | gene14221-v1.0-hybrid | Fvb7:2184725.0.2185715 (+strand) | 1 | 132 | 15.20 | 7.31 | VQ | n* | |