Table 2. Identifiable TEs found in the An. darlingi genome.
Seq | TE Name | Superfamily | Copies | Size | Censor Hit | ID(%) | Score | Status | TIRs (bp) | TSD |
---|---|---|---|---|---|---|---|---|---|---|
1 | Mariner1-Andl | DNA/Mariner | 190 | 907 | Mariner-N2_SIn | 71 | 1769 | Degen. | - | TA |
2 | Mariner2-Andl | DNA/Mariner | 32 | 941 | ITmD37D_Ele1 | 68 | 1581 | Degen. | - | TA |
3 | Mariner3-Andl | DNA/Mariner | 28 | 1265 | Mariner-6_PBa | 75 | 3657 | Degen. | - | TA |
4 | Mariner4-Andl | DNA/Mariner | 44 | 1194 | Mariner-2_ACe | 79 | 5637 | Truncated | - | TA |
5 | Mariner5-Andl | DNA/Mariner | 91 | 890 | Mariner-2_AEc | 71 | 1376 | Degen. | - | TA |
6 | Mariner6-Andl | DNA/Mariner | 30 | 905 | Mariner-30_SIn | 77 | 2180 | Degen. | - | TA |
7 | Mariner7-Andl | DNA/Mariner | 99 | 912 | Mariner-1_DF | 65 | 274 | Degen. | - | TA |
8 | Mariner8-Andl | DNA/Mariner | 20 | 1673 | AeTango2 | 65 | 2023 | Truncated | - | TA |
9 | Mariner9-Andl | DNA/Mariner | 10 | 738 | CRMAR | 71 | 1749 | MITE | 223 | TA |
10 | Mariner10-Andl | DNA/Mariner | 2 | 489 | MARINER_CA | 72 | 1371 | MITE | 22 | TA |
11 | Mariner11-Andl | DNA/Mariner | 12 | 1664 | Mariner-8-Dan | 68 | 1317 | Put. Active | 230 | TA |
12 | Mariner12-Andl | DNA/Mariner | 46 | 1285 | ITmD37D_Ele3 | 65 | 894 | Degen. | 30 | TA |
13 | Mariner13-Andl | DNA/Mariner | 64 | 906 | Mariner_3_DF | 69 | 1521 | Degen. | 64 | TA |
14 | Mariner14-Andl | DNA/Mariner | 3 | 1321 | Mariner_16_Dan | 70 | 2061 | Degen. | 33 | TA |
15 | Mariner15-Andl | DNA/Mariner | 31 | 1220 | Mariner-16_DAn | 70 | 2390 | Degen. | 23 | TA |
16 | Mariner16-Andl | DNA/Mariner | 3 | 1471 | Mariner-3_DF | 70 | 376 | Degen. | 25 | TA |
17 | Mariner17-Andl | DNA/Mariner | 3 | 886 | Mariner-6_BM | 66 | 597 | Degen. | 29 | TA |
18 | Mariner18-Andl | DNA/Mariner | 42 | 1268 | Tc1-1_TCa | 68 | 331 | Degen. | 215/225 | TA |
19 | Mariner19-Andl | DNA/Mariner | 9 | 792 | Mariner-6_BM | 65 | 539 | MITE | 17 | TA |
20 | Mariner20-Andl | DNA/Mariner | 49 | 759 | Tx_mos | 65 | 577 | MITE | 25 | TA |
21 | Mariner21-Andl | DNA/Mariner | 1 | 796 | MARINER_CA | 71 | 894 | MITE | 30 | TA |
22 | Mariner22-Andl | DNA/Mariner | 2 | 1755 | MARINER_CA | 68 | 1673 | Degen. | 25 | TA |
23 | Mariner23-Andl | DNA/Mariner | 200 | 1212 | Tx_mos | 63 | 532 | Degen. | - | TA |
24 | Mariner24-Andl | DNA/Mariner | 100 | 394 | - | - | - | Degen. | - | TA |
25 | Mariner25-Andl | DNA/Mariner | 100 | 328 | - | - | - | Degen. | - | TA |
26 | Mariner26-Andl | DNA/Mariner | 21 | 702 | Mariner-58_Ccri | - | - | MITE | 28 | TA |
27 | DNAUnknown-Andl1 | DNA/Unknown | 100 | 555 | Degen. | |||||
28 | DNAUnknown-Andl2 | DNA/Unknown | 100 | 234 | - | - | - | Degen. | - | - |
29 | DNAUnknown-Andl3 | DNA/Unknown | 60 | 514 | - | - | - | Degen. | - | - |
30 | DNAUnknown-Andl4 | DNA/Unknown | 40 | 478 | - | - | - | Degen. | - | TTAA |
31 | PiggyBac1_Andl | DNA/piggyBac | 27 | 2954 | piggyBac-1_DBi | 67 | 2143 | Truncated | 19 | TTAA |
32 | Kolobok1-Andl | DNA/Kolobok | 47 | 751 | Kolobok-N1_Dan | 76 | 349 | Degen. | 14 | TTAA |
33 | Helitron1_Andl | DNA/Helitron | 85 | 1327 | Helitron-2_DBp | 76 | 275 | Degen. | - | A/T |
34 | Gypsy1_Andl | LTR/Gypsy | 1 | 5366 | Gypsy-625_AA-I | 67 | 7288 | Put. Active | 210/208 | - |
35 | Gypsy2_Andl | LTR/Gypsy | 1 | 4325 | GYPSY36-I_AG | 68 | 6928 | Put. Active | 167/166 | - |
36 | Copia1_Andl | LTR/Copia | 1 | 4294 | Copia-70_AA-I | 63 | 2624 | Put. Active | 184/202 | - |