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. 2019 Mar 18;7:e6602. doi: 10.7717/peerj.6602

Table 1. List of sequences used for phylogenetic analysis in this study.

Virus Abbreviation Retrovirus GenBank accession no. Length
Alpha retrovirus
ALV Avian leukosis virus KU375453 7,746 bp
RSV Rous sarcoma virus AF052428 9,396 bp
LPDV Lymphoproliferative disease virus U09568 7,143 bp
Beta retrovirus
RERV Rabbit endogenous retrovirus AF480925 6,300 bp
SRV-1 Simian SRV-1 type D retrovirus M11841 8,173 bp
MMTV Mouse mammary tumor virus NC_001503 8,805 bp
Spuma retrovirus
HFV Human foamy virus Y07725 13,242 bp
FeFV Feline foamy virus AJ223851 10,479 bp
SFV Macaque simian foamy virus X54482 12,972 bp
SMRV Squirrel monkey virus GU356394 11,684 bp
EFV Equine foamy virus AF201902 12,035 bp
Delta retrovirus
BLV Bovine leukemia virus K02120 8,714 bp
HTLV-1 Human T-lymphotropic virus 1 D13784 8,400 bp
STLV-1 Siman T-lymphotropic virus 1 Z46900 9,025 bp
Epsilon retrovirus
WDSV Walleye dermal sarcoma virus L41838 12,708 bp
WEHV1 Walleye epidermal hyperplasia virus 1 AF133051 12,999 bp
WEHV2 Walleye epidermal hyperplasia virus 2 AF133052 13,125 bp
Gamma retrovirus
BaEV Baboon endogenous virus X05470 8,018 bp
MuLV Moloney murine leukemia virus AF033811 8,332 bp
MDEV Mus dunni endogenous virus AF053745 8,655 bp
GALV Gibbon ape leukemia virus M26927 8,088 bp
FeLV Feline leukemia virus M18247 8,440 bp
PERV Porcine endogenous retrovirus AF038601 7,333 bp
KoRV Koala type C endogenous virus AF151794 8,431 bp
RMLV Rauscher murine leukemia virus U94692 8,282 bp
RaLV Rat leukemia virus M77194 8,107 bp
Lentivirus
HIV-1 Human immunodeficiency virus 1 K03454 9,176 bp
HIV-2 Human immunodeficiency virus 2 X05291 9,671 bp
SIV simian immunodeficiency virus M33262 10,535 bp
FIV Feline immunodeficiency virus M25381 9,474 bp
EIAV Equine infectious anemia virus AF028232 8,229 bp
MVV Ovine lentivirus M31646 9,256 bp
BIV Bovine immunodeficiency virus M32690 8,482 bp