TABLE 1.
Candidates for gene deletion
| Gene | ID | Secretion prediction |
TMHMMa | Predicted domain (Pfam or InterPro accession no.) |
Putative protein homolog (reference) (% identity; alignment score; E value) |
|---|---|---|---|---|---|
| atf1 | 190180 | No | None | bZIP_1 (PF00170) | Atf1 (45) (30.4; 200; 1.4e−15) |
| atf2 | 156289 | No | None | bZIP_1 (PF00170) | Atf1 (45) (31.1; 180; 5.7e−14) |
| gcn4 | 85517 | No | None | bZIP_1 (PF00170) | GCN4 (62) (50; 100; 1.4e−3) |
| pps1 | 115037 | Yes | None | None predicted | MP88 (40) (29; 190; 7e−17) |
| aqp1 | 167023 | Yes | 6 | Aquaporin-like (IPR023271) | AQY1 (63) (32; 309; 3.7e−31) |
| chi1 | 189685 | NCSb | None | None predicted | None |
| igp1 | 154866 | Yes | None | None predicted | None |
| ico1 | 155573 | Yes | None | Isochorismatase (PF00857) | YcaC (64) (61.9; 655; 2.2e−84) |
a
TMHMM, Transmembrane Helix Prediction based on a hidden Markov Model.
b
Putative secretion by noncanonical secretion (NCS) pathway.